Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P14
         (421 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0136 + 12195422-12195435,12196047-12196122,12196896-121977...    29   1.5  
07_03_0874 - 22202699-22203070,22204239-22204874                       28   3.5  
07_03_1298 - 25592788-25592890,25593126-25593229,25593747-255938...    27   8.1  

>06_02_0136 +
           12195422-12195435,12196047-12196122,12196896-12197707,
           12197941-12198010,12199469-12199557,12199633-12199666
          Length = 364

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 105 ICSKNHVFLYSLYFLEETSCWLCYTKVLS 19
           +C KNH  L SL   +E  C +C  +VLS
Sbjct: 193 LCEKNHKRLESLKRSQEIECSVCLDRVLS 221


>07_03_0874 - 22202699-22203070,22204239-22204874
          Length = 335

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 329 TAGFKGRSKSCTHHGVGGCSRVAQEKKKKK 418
           TA  K   KSC +    GCSR  Q  +K K
Sbjct: 185 TAAVKELEKSCRNASYAGCSRCVQSLQKLK 214


>07_03_1298 -
           25592788-25592890,25593126-25593229,25593747-25593808,
           25593957-25594065,25594215-25594355,25594707-25594769,
           25594974-25595084,25596140-25596457
          Length = 336

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 341 KGRSKSCTHHGVGGCSRVAQEKKKKK 418
           + R++      V GCSRV+ +KKKKK
Sbjct: 22  ESRARVSRSRVVEGCSRVSLKKKKKK 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,215,326
Number of Sequences: 37544
Number of extensions: 135984
Number of successful extensions: 290
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)