Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P14
         (421 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonin...    29   1.4  
U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase ...    29   1.4  
U11280-4|AAM97951.2|  353|Caenorhabditis elegans Protein kinase ...    29   1.4  
U58745-2|AAU05593.1|  569|Caenorhabditis elegans Hypothetical pr...    28   2.4  
U58745-1|AAB00620.2|  574|Caenorhabditis elegans Hypothetical pr...    28   2.4  

>U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonine
           kinase protein.
          Length = 982

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 114 FLNICSKNHVFLYSLYFLEETSCWL 40
           FLN     H+  Y   FL++T+CWL
Sbjct: 81  FLNTVVHPHIVDYKACFLKDTTCWL 105


>U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase
           protein 18, isoforma protein.
          Length = 982

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 114 FLNICSKNHVFLYSLYFLEETSCWL 40
           FLN     H+  Y   FL++T+CWL
Sbjct: 81  FLNTVVHPHIVDYKACFLKDTTCWL 105


>U11280-4|AAM97951.2|  353|Caenorhabditis elegans Protein kinase
           protein 18, isoformb protein.
          Length = 353

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 114 FLNICSKNHVFLYSLYFLEETSCWL 40
           FLN     H+  Y   FL++T+CWL
Sbjct: 81  FLNTVVHPHIVDYKACFLKDTTCWL 105


>U58745-2|AAU05593.1|  569|Caenorhabditis elegans Hypothetical
           protein C10G6.1b protein.
          Length = 569

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/27 (40%), Positives = 21/27 (77%)
 Frame = +3

Query: 3   QFCKIDSTLWCSKANKMSLLENRANKE 83
           QF K++  L+  ++NK+SL++NR N++
Sbjct: 236 QFLKLNRGLFFIRSNKVSLVKNRLNED 262


>U58745-1|AAB00620.2|  574|Caenorhabditis elegans Hypothetical
           protein C10G6.1a protein.
          Length = 574

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/27 (40%), Positives = 21/27 (77%)
 Frame = +3

Query: 3   QFCKIDSTLWCSKANKMSLLENRANKE 83
           QF K++  L+  ++NK+SL++NR N++
Sbjct: 236 QFLKLNRGLFFIRSNKVSLVKNRLNED 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,369,639
Number of Sequences: 27780
Number of extensions: 134030
Number of successful extensions: 293
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)