Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P14
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   1.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   9.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   9.9  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 184 IHDKNIVG*SEMKCVLCVRIY 246
           + DK+     E +CV+C R+Y
Sbjct: 25  VADKHAERQEEYRCVICERVY 45


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 246 IYSDTEDTFHFRLSH 202
           IY + +D+FH   SH
Sbjct: 213 IYQNADDSFHRLSSH 227


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 216 NEMCPLCQNIYCYFVTDA 269
           NE+    QN +CYF  +A
Sbjct: 528 NEIYNWFQNTFCYFRRNA 545


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,666
Number of Sequences: 438
Number of extensions: 1678
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)