Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P13
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        30   0.27 
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   2.5  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   3.3  
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    26   4.4  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    25   5.8  

>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 308 FKTIKMVCSFKNIFTYILWYDMIRYDIFLLNYKYEFF 418
           + T+ +V +  NI++   +YD I YD   +  KYE F
Sbjct: 29  YDTVSLVSNAPNIYSIPFFYDRICYDYKNILLKYELF 65


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 433 NNINFLQETISIVTKVGLVHKVPN 504
           +N+N+ +E IS+  K+ + HK+ N
Sbjct: 553 SNVNYARECISLSIKIAVSHKLTN 576


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 393 KNISYRIMSYHKI*VKMFLNEHTIFIVLNFLL 298
           K I  R+  +HK+  ++ LN+H+I  +L+ +L
Sbjct: 31  KTILARLQQFHKLCSEVGLNQHSISSLLDVIL 62


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 22/78 (28%), Positives = 35/78 (44%)
 Frame = +1

Query: 4   KLRH*KQWQFRRLSSNYLSGKIDHKASYMQDAL*FFFKQY*NHVKIVIVFRYLLKLK*SN 183
           KLRH K+++ ++ + N L   ID   S   DAL F       H  + ++   L KL  S 
Sbjct: 283 KLRHRKRYETKKATFNRLKNTIDDFESGNYDAL-FILS---IHTPMSVLQHLLPKLGISR 338

Query: 184 KEIIYLRTNKTLKHLHRQ 237
             ++Y    + L   + Q
Sbjct: 339 PFMVYSTYQQVLVETYHQ 356


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 208 NKTLKHLHRQKDLENISTANKVLLRFSL 291
           NKT K   ++K  E I   NKVL  F+L
Sbjct: 88  NKTKKKRKKEKKKETIVEKNKVLKSFAL 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,059
Number of Sequences: 5004
Number of extensions: 47484
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)