Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P13
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0418 - 3186093-3186437,3187286-3187438,3187541-3188398,318...    30   1.5  
06_01_0733 + 5405889-5405922,5405923-5405975,5406430-5406543,540...    27   7.7  

>07_01_0418 -
           3186093-3186437,3187286-3187438,3187541-3188398,
           3188479-3188541
          Length = 472

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 461 IVSCKKLILLKFSLGRIHIYS*VKIYHIESCHTIK 357
           IV C KL  L  S    H+++ +K  H+ESCH +K
Sbjct: 210 IVDCGKLTRLSTS----HLWNQLKHLHVESCHLLK 240


>06_01_0733 +
           5405889-5405922,5405923-5405975,5406430-5406543,
           5407464-5407523,5408139-5408217,5410661-5410728,
           5411198-5411302,5411887-5411994,5412087-5412279,
           5412818-5412897,5413309-5413536,5414112-5414252,
           5414341-5414466,5414561-5414611,5414879-5414956,
           5415814-5415960,5416685-5417179
          Length = 719

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 205 TNKTLKHLHRQKDLENISTANKVLLRFSLL 294
           T+ TLK  HR K +E  +T NK++   SL+
Sbjct: 186 THNTLKFAHRAKHIEIQATQNKIMDARSLI 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,621,910
Number of Sequences: 37544
Number of extensions: 221338
Number of successful extensions: 415
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)