Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P13
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40424-1|AAA81456.2|  461|Caenorhabditis elegans Twik family of ...    27   7.0  
AF083650-1|AAC32861.1|  461|Caenorhabditis elegans potassium cha...    27   7.0  

>U40424-1|AAA81456.2|  461|Caenorhabditis elegans Twik family of
           potassium channelsprotein 18 protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 89  CKMLYDFFLNSTRIM*K 139
           CKML+ FFL STR++ K
Sbjct: 172 CKMLWRFFLKSTRVVSK 188


>AF083650-1|AAC32861.1|  461|Caenorhabditis elegans potassium
           channel subunit n2P18 protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 89  CKMLYDFFLNSTRIM*K 139
           CKML+ FFL STR++ K
Sbjct: 172 CKMLWRFFLKSTRVVSK 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,427,099
Number of Sequences: 27780
Number of extensions: 252673
Number of successful extensions: 489
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)