Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P12
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    28   0.59 
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    27   1.4  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   4.1  
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    25   5.5  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    24   7.2  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    24   9.5  

>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = +1

Query: 19  MTTNKSRETVCKQLEKM-TPLDKLQERRAWRDACLTRLSILKKEMNKKYNS 168
           + T+ SR+ + + L+++  PLD  ++R AW ++ L +L  L ++   ++NS
Sbjct: 302 LPTSISRKGIIRYLKEIYKPLDP-KDRNAWEESELKKLYTLVEQEGTRWNS 351


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 307 TLYQIDII*RLNNSQKNNTHEKYDIKNL 224
           T Y ++   +L N + NN  E YD+K L
Sbjct: 800 TKYVVNSTSKLTNEEINNVFESYDLKRL 827


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 10  IPKMTTNKSRETVCKQLEKMTPLDKLQER 96
           I K+TTN   ET+ + +E++ P  +  ER
Sbjct: 566 ISKVTTNGPSETISEDIEEILPSLESSER 594


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 43  TVCKQLEKMTPLDKLQERR 99
           TVC  L K  PL+++Q+R+
Sbjct: 316 TVCSGLVKYIPLEQMQQRK 334


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 241 TFHVCCFFENYLIFRLCLFDTECRYDV 321
           +F++C +F  +L+F    F  EC Y +
Sbjct: 92  SFYIC-YFSIFLLFFAISFQAECYYSL 117


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -3

Query: 356 LHDLFTYSDYNYTSYLHSVSNRHN 285
           +HDL  +S+ NYT++ + +  +H+
Sbjct: 111 VHDLAKFSELNYTAF-YKIIKKHD 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,513,722
Number of Sequences: 5004
Number of extensions: 26040
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)