Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P12
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100307-9|AAC68938.1|  321|Caenorhabditis elegans Hypothetical ...    31   0.29 
AF016419-2|AAG24055.2|  325|Caenorhabditis elegans Serpentine re...    28   2.0  
Z49125-4|CAA88936.1|  644|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>AF100307-9|AAC68938.1|  321|Caenorhabditis elegans Hypothetical
           protein T12B5.11 protein.
          Length = 321

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 1   FGPIPKMTTNKSRETVCKQLEKMTPLDKLQERRAWRD--ACLTRLSI 135
           FGPI     N     V + LEK+ P+D+L+ R+  R+   C+ R  I
Sbjct: 19  FGPISPTLYNMPINIVDQVLEKLEPMDRLKIRKVCRNLRTCVDRFGI 65


>AF016419-2|AAG24055.2|  325|Caenorhabditis elegans Serpentine
           receptor, class j protein32 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 198 CFFYLFY*NKFLMSYFSCVLFF*ELFNL 281
           CF YL Y  KF +  ++ +L++  +FN+
Sbjct: 24  CFIYLTYAEKFKLGNYAFLLYYFAIFNI 51


>Z49125-4|CAA88936.1|  644|Caenorhabditis elegans Hypothetical
           protein C47G2.4 protein.
          Length = 644

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = -1

Query: 94  VPVIYPGVSSFLIVCILFLCS 32
           +P++  G++ +L +CI+ LC+
Sbjct: 504 IPILAKGINIYLPICIILLCA 524


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,391,883
Number of Sequences: 27780
Number of extensions: 148401
Number of successful extensions: 390
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)