Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P09
         (304 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0947 - 29081007-29081047,29081670-29081958,29083044-290834...    29   0.92 
08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    28   1.2  
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161     28   1.2  
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764...    28   1.2  
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129           28   1.2  
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171...    27   2.1  
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164...    26   6.5  
04_03_0753 + 19304145-19304385,19305234-19305413,19305431-19305540     26   6.5  
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160...    25   8.6  
06_03_1287 - 29011710-29011871,29012209-29012272,29012556-290126...    25   8.6  

>03_05_0947 -
           29081007-29081047,29081670-29081958,29083044-29083424,
           29083935-29084129
          Length = 301

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 149 RVHRNRHVVASTPPGRTNPYGGRCDL 226
           R  R+  VV   PP RT P GG C L
Sbjct: 18  RPRRSAAVVCERPPHRTGPAGGSCFL 43


>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +2

Query: 107 ESDDDMGFGLFD 142
           ESDDDMGF LFD
Sbjct: 99  ESDDDMGFSLFD 110


>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
          Length = 113

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +2

Query: 107 ESDDDMGFGLFD 142
           ESDDDMGF LFD
Sbjct: 102 ESDDDMGFSLFD 113


>02_04_0074 -
           19474786-19474812,19475174-19475400,19476362-19476496,
           19478662-19479193
          Length = 306

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +2

Query: 107 ESDDDMGFGLFD 142
           ESDDDMGF LFD
Sbjct: 295 ESDDDMGFSLFD 306


>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
          Length = 114

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +2

Query: 107 ESDDDMGFGLFD 142
           ESDDDMGF LFD
Sbjct: 103 ESDDDMGFSLFD 114


>08_01_0215 -
           1714224-1714364,1714795-1715187,1715279-1715377,
           1716248-1716316,1716408-1716665
          Length = 319

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/47 (29%), Positives = 15/47 (31%)
 Frame = +2

Query: 2   KDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFGLFD 142
           KDPSKF                             ESD D+G  LFD
Sbjct: 273 KDPSKFAVAAPVAADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 319


>11_01_0210 -
           1647922-1648065,1648459-1648851,1648930-1649028,
           1649706-1649774,1649877-1650134
          Length = 320

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
 Frame = +2

Query: 2   KDPSKF-VXXXXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFGLFD 142
           KDPSKF V                            ESD D+G  LFD
Sbjct: 273 KDPSKFAVAAAVAAADSGAAAPAASKEEEKKEEPEEESDGDLGMSLFD 320


>04_03_0753 + 19304145-19304385,19305234-19305413,19305431-19305540
          Length = 176

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 212 RHMGLSVPAVLMRPHVYYDAHVLSQRDQSPCRRHS 108
           RH+GL  P V   PH  ++   L +R       HS
Sbjct: 130 RHLGLFAPRVAGAPHPQHNLTALVERQSKRVMFHS 164


>12_01_0211 -
           1601129-1601272,1601670-1602062,1602142-1602240,
           1602920-1602988,1603071-1603328
          Length = 320

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
 Frame = +2

Query: 2   KDPSKF-VXXXXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFGLFD 142
           KDPSKF V                            ESD D+G  LFD
Sbjct: 273 KDPSKFAVAAPVAAADSGAAAVASSKEEEKKEEPEEESDGDLGMSLFD 320


>06_03_1287 -
           29011710-29011871,29012209-29012272,29012556-29012611,
           29012787-29012984
          Length = 159

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +2

Query: 107 ESDDDMGFGLFD 142
           ES+DD+GF LFD
Sbjct: 148 ESEDDLGFSLFD 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,735,388
Number of Sequences: 37544
Number of extensions: 87611
Number of successful extensions: 196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)