Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_P09
(304 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 31 0.21
U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical pr... 31 0.21
U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal prote... 31 0.21
AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical ... 31 0.21
AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal pro... 31 0.21
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 28 1.1
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 28 1.1
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 28 1.1
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 28 1.1
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 26 6.0
Z48045-11|CAM33500.1| 887|Caenorhabditis elegans Hypothetical p... 25 7.9
Z48045-10|CAA88101.2| 849|Caenorhabditis elegans Hypothetical p... 25 7.9
U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone... 25 7.9
U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone... 25 7.9
U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone... 25 7.9
U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone... 25 7.9
U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone... 25 7.9
AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear recep... 25 7.9
AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear recep... 25 7.9
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 30.7 bits (66), Expect = 0.21
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 107 ESDDDMGFGLFD 142
ESDDDMGFGLFD
Sbjct: 301 ESDDDMGFGLFD 312
>U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical
protein C37A2.7 protein.
Length = 107
Score = 30.7 bits (66), Expect = 0.21
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 107 ESDDDMGFGLFD 142
ESDDDMGFGLFD
Sbjct: 96 ESDDDMGFGLFD 107
>U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal protein
P1 homolog protein.
Length = 111
Score = 30.7 bits (66), Expect = 0.21
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 107 ESDDDMGFGLFD 142
ESDDDMGFGLFD
Sbjct: 100 ESDDDMGFGLFD 111
>AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical
protein Y62E10A.1 protein.
Length = 110
Score = 30.7 bits (66), Expect = 0.21
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 107 ESDDDMGFGLFD 142
ESDDDMGFGLFD
Sbjct: 99 ESDDDMGFGLFD 110
>AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal
protein, acidic protein 1 protein.
Length = 111
Score = 30.7 bits (66), Expect = 0.21
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 107 ESDDDMGFGLFD 142
ESDDDMGFGLFD
Sbjct: 100 ESDDDMGFGLFD 111
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 185 VLMRPHVYYDAHVLSQRDQSPCRRHS 108
V++ P YY+ VL QR PC HS
Sbjct: 986 VVVLPAEYYEGTVLRQRAPQPCLSHS 1011
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 185 VLMRPHVYYDAHVLSQRDQSPCRRHS 108
V++ P YY+ VL QR PC HS
Sbjct: 986 VVVLPAEYYEGTVLRQRAPQPCLSHS 1011
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 185 VLMRPHVYYDAHVLSQRDQSPCRRHS 108
V++ P YY+ VL QR PC HS
Sbjct: 986 VVVLPAEYYEGTVLRQRAPQPCLSHS 1011
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 185 VLMRPHVYYDAHVLSQRDQSPCRRHS 108
V++ P YY+ VL QR PC HS
Sbjct: 986 VVVLPAEYYEGTVLRQRAPQPCLSHS 1011
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = +2
Query: 161 NRHVVASTPPGRT--NPYGGRCDLQT 232
N VVA+T P NPY G CD T
Sbjct: 596 NGQVVATTCPANLIFNPYVGECDYST 621
>Z48045-11|CAM33500.1| 887|Caenorhabditis elegans Hypothetical
protein C41C4.5b protein.
Length = 887
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 213 PPYGFVRPGGVDATT 169
PPYG R GG DA T
Sbjct: 526 PPYGHCRHGGEDAAT 540
>Z48045-10|CAA88101.2| 849|Caenorhabditis elegans Hypothetical
protein C41C4.5a protein.
Length = 849
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 213 PPYGFVRPGGVDATT 169
PPYG R GG DA T
Sbjct: 488 PPYGHCRHGGEDAAT 502
>U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform b protein.
Length = 400
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = -3
Query: 254 YLLHRNVMFVSRIDRHMGLSVPAVLMRPHVYYDAHVLSQR 135
YLL R+D H +P H +Y+ H++ R
Sbjct: 142 YLLASLSRIFERVDEHAPEPLPNTYSFEHAFYNPHLICNR 181
>U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform c protein.
Length = 440
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = -3
Query: 254 YLLHRNVMFVSRIDRHMGLSVPAVLMRPHVYYDAHVLSQR 135
YLL R+D H +P H +Y+ H++ R
Sbjct: 182 YLLASLSRIFERVDEHAPEPLPNTYSFEHAFYNPHLICNR 221
>U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform d protein.
Length = 446
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = -3
Query: 254 YLLHRNVMFVSRIDRHMGLSVPAVLMRPHVYYDAHVLSQR 135
YLL R+D H +P H +Y+ H++ R
Sbjct: 188 YLLASLSRIFERVDEHAPEPLPNTYSFEHAFYNPHLICNR 227
>U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform a protein.
Length = 448
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = -3
Query: 254 YLLHRNVMFVSRIDRHMGLSVPAVLMRPHVYYDAHVLSQR 135
YLL R+D H +P H +Y+ H++ R
Sbjct: 188 YLLASLSRIFERVDEHAPEPLPNTYSFEHAFYNPHLICNR 227
>U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform e protein.
Length = 450
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = -3
Query: 254 YLLHRNVMFVSRIDRHMGLSVPAVLMRPHVYYDAHVLSQR 135
YLL R+D H +P H +Y+ H++ R
Sbjct: 190 YLLASLSRIFERVDEHAPEPLPNTYSFEHAFYNPHLICNR 229
>AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear receptor
NHR-21b protein.
Length = 400
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = -3
Query: 254 YLLHRNVMFVSRIDRHMGLSVPAVLMRPHVYYDAHVLSQR 135
YLL R+D H +P H +Y+ H++ R
Sbjct: 142 YLLASLSRIFERVDEHAPEPLPNTYSFEHAFYNPHLICNR 181
>AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear receptor
NHR-21a protein.
Length = 458
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = -3
Query: 254 YLLHRNVMFVSRIDRHMGLSVPAVLMRPHVYYDAHVLSQR 135
YLL R+D H +P H +Y+ H++ R
Sbjct: 200 YLLASLSRIFERVDEHAPEPLPNTYSFEHAFYNPHLICNR 239
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,793,054
Number of Sequences: 27780
Number of extensions: 73643
Number of successful extensions: 160
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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