Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P09
         (304 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   2.5  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          21   3.3  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          20   5.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   5.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     20   5.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   7.7  

>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 185 PPGRTNPYGGRCDLQTLRFYV 247
           PPG    +G     QT+RF V
Sbjct: 273 PPGVPGDHGDHAPKQTVRFKV 293


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 205 IWRSMRLTNITFLCNKY 255
           I R M+ T+ITF  NK+
Sbjct: 37  ILRGMQFTDITFGVNKW 53


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 223 VASTAIWVCPSRRC*CDHMSITMH 152
           V  T +WV  ++R      ++TMH
Sbjct: 87  VLHTTVWVAGAQRGNEQRCTVTMH 110


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 125 GFGLFD*ARVHRNRHVVASTPPGR 196
           GFG F    VH+   +   TP  R
Sbjct: 269 GFGDFQPVHVHKQTAIAFRTPTYR 292


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 125 GFGLFD*ARVHRNRHVVASTPPGR 196
           GFG F    VH+   +   TP  R
Sbjct: 269 GFGDFQPVHVHKQTAIAFRTPTYR 292


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 227 VSRIDRHMGLSVPAVLMRPHVYYDAHVLSQRDQ 129
           VS+IDR   +  P   +  +V+Y    LS+ ++
Sbjct: 420 VSKIDRASRIVFPLFFLAINVFYWFAYLSRSER 452


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,016
Number of Sequences: 438
Number of extensions: 789
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)