Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P07
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    30   0.22 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.2  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    26   3.7  
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    25   4.8  
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   4.8  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   6.4  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   6.4  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    25   8.4  

>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 20/76 (26%), Positives = 32/76 (42%)
 Frame = +3

Query: 114 LPEDEGEYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKHGQDVTIPCKVTGLP 293
           LPE+E E T  ++ G+G P K   K T+      E   E    ++    +T+P  ++ L 
Sbjct: 427 LPEEERE-TYTLEEGLGLPSKSIYKKTIKLVYTSEHAEEMFKALERMPCLTLPLVISRLE 485

Query: 294 APKVVWSHNAKPLSGG 341
                W    + L  G
Sbjct: 486 EKNEEWKSVKRSLQPG 501


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 43  TETLKTVSPATIEPQASVFSSRQHSQKTRANTLAKSTMESANPKSTL 183
           T +  T+S ++  P +S FSS   S K+ ++  +  +  S+   STL
Sbjct: 337 TSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTL 383


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +3

Query: 102 FKTTLPEDEGEYTCEVDNGVGKPQK--HSLKLTVVSAPKYEQ-KPEKVIVVKHGQDVTIP 272
           F+T LPED  ++       +G+PQK  H++ L+  +  + +Q  PE+   +  G  +  P
Sbjct: 101 FRTILPEDYKKFYPNAKTHMGRPQKIPHTVGLSKSTRKERKQFTPEEDERLLEGFFLHGP 160

Query: 273 C 275
           C
Sbjct: 161 C 161


>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 339 GRATVSDSGLVIKGVQKGDTGYYGCRAT-NEHGDKYFETLLQ 461
           G AT S +GLV   V      Y G       HGD Y+E LL+
Sbjct: 230 GDATWSHTGLVPITVNLITGAYVGRNIRLGSHGDSYYEYLLK 271


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 72  HNRTSGKRLLFKTTLPEDE--GEYTCEVDNGVGKPQKHSLKLTVVSAP 209
           +N  SG  L   TT+P DE   ++T +VD    +    SL L + S+P
Sbjct: 305 NNNKSGDSLEMSTTIPSDEENEDFTSKVD--AMEIHSGSLPLNIDSSP 350


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 964

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 346  LRSVTAVWSSKAYKRVTRDTTAAELLTSTEINTSRPFYKLTKEVTMNDT 492
            + S + V +SK+ ++   DT+A +     E   ++P  KL  +   ND+
Sbjct: 877  VNSSSMVDASKSKEKSGGDTSALDSNAKNEPTAAKPISKLEDDALFNDS 925


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 345 PCHRLEASRYGSRRPWALADRSPCTES*HPVRVSQRSPF 229
           P   L+ + YG RRP  L+  SP +   +   +S    F
Sbjct: 27  PVSSLDTNNYGQRRPSLLSGTSPTSSFFNSSMISSNYTF 65


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +3

Query: 75  NRTSGKRLLFKTTLPEDEGEYTCEVDNGVGKPQKHSLKLTVVSAPKY 215
           NRTS     F TTLP    E+T E  N   +  K  LK  +    K+
Sbjct: 786 NRTSRYMHTFDTTLPMQNDEFTDESVNFENR-WKQELKTPISRFSKF 831


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,042,759
Number of Sequences: 5004
Number of extensions: 41706
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)