Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_P07
(500 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 32 0.23
07_03_1482 - 26864793-26865043,26865325-26865454,26865564-268657... 30 0.91
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 30 1.2
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 29 2.8
05_01_0421 + 3308692-3309070,3309199-3309339,3309776-3309897,331... 28 3.7
08_02_1131 + 24523435-24523447,24526425-24527509 28 4.8
08_01_0632 - 5479118-5479555,5479701-5479866,5480452-5480565,548... 28 4.8
03_02_0039 - 5213699-5214775,5214815-5215093,5215300-5215776,521... 28 4.8
12_02_0298 + 17041206-17041712 27 8.5
03_02_0052 + 5285061-5285106,5285711-5285754,5286317-5286539,528... 27 8.5
01_06_1200 - 35362412-35362432,35362526-35362715,35362799-353628... 27 8.5
01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008 27 8.5
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 32.3 bits (70), Expect = 0.23
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 165 KPQKHSLKLTVVSAPKYEQKPEKVIVVKHGQDVTIPCKVTGLPAP 299
+P +H ++ + +P ++ E + + HG D + C TG PAP
Sbjct: 77 QPLEHGVEDEIDGSPYHDALGEHYVGILHGVDASPACSRTGAPAP 121
>07_03_1482 -
26864793-26865043,26865325-26865454,26865564-26865771,
26867529-26867599,26867875-26867884,26869562-26870310
Length = 472
Score = 30.3 bits (65), Expect = 0.91
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = +3
Query: 198 VSAPKYEQKPEKVIVVKHGQDVTIPCKVTGLPAPKVVWSHNA--KPLSGGRATVSDSGLV 371
V A + + E V+VV GQDV CK G ++ S N+ K + G +S G
Sbjct: 370 VDAKDFAGECEAVVVVAKGQDVQGTCKY-GTRVDYILASPNSPYKFVPGSYTVISSKGTS 428
Query: 372 IKGVQKGDTGYYGCRATNEHGDKYFETLLQVN 467
+ K D + T+E + ++++N
Sbjct: 429 DHHIVKVDVTIQDKKETDEESGNQRQRVVKIN 460
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 29.9 bits (64), Expect = 1.2
Identities = 25/91 (27%), Positives = 41/91 (45%)
Frame = +3
Query: 60 RITRHNRTSGKRLLFKTTLPEDEGEYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVI 239
RI R R +RL +P ++T +D +G ++ LK A + +K I
Sbjct: 56 RIQRQRRVLKQRL----KVPPALNQFTRTLDKNLGCQKERLLKRAQAEAEGKTVEAKKPI 111
Query: 240 VVKHGQDVTIPCKVTGLPAPKVVWSHNAKPL 332
VVK+G D + + A VV +H+ P+
Sbjct: 112 VVKYGLD-HVTYLIEQSKAQLVVIAHDVDPI 141
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +3
Query: 291 PAPKVVWSHNAKPLSGGRATVSDSGLVIKGVQKGDTG 401
PAPK V S A SG + SDSG +G D G
Sbjct: 1206 PAPKAVQSQPAPKRSGDGGSSSDSGSSKEGGSSSDRG 1242
>05_01_0421 +
3308692-3309070,3309199-3309339,3309776-3309897,
3310369-3310632,3310719-3310849,3311254-3311461,
3311564-3311632,3311722-3311799,3312448-3312621
Length = 521
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 298 PRSS-GAITRSL*AVAGLRSVTAVWSSKAYKRVTRDTTAAELLTSTEINT 444
PRSS G +TRS V L V SSK +R+ ++ AA TST T
Sbjct: 42 PRSSSGRLTRSRAKV--LEESAGVSSSKKKRRIEEESPAATTTTSTTATT 89
>08_02_1131 + 24523435-24523447,24526425-24527509
Length = 365
Score = 27.9 bits (59), Expect = 4.8
Identities = 21/72 (29%), Positives = 29/72 (40%)
Frame = -3
Query: 330 EASRYGSRRPWALADRSPCTES*HPVRVSQRSPFQASARTSVH*LQSISKSAFGVCRLHC 151
EA R G R P+ + P RV+ PF A+A +V L ++ +
Sbjct: 147 EAVRVGERLPFYFPAATTSALGFLPRRVADSIPFTAAALPAVLALFGVAPDTAEAAGMRE 206
Query: 150 RLRKCIRPRLLG 115
LR C P L G
Sbjct: 207 TLRTCEWPTLAG 218
>08_01_0632 -
5479118-5479555,5479701-5479866,5480452-5480565,
5480713-5480849
Length = 284
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 137 VFALVFWEC-CLEEKTLA*GSIVAGDTVFRVSVHVLTILEV 18
VF +C CLE+ + G + G+T F +SV V + E+
Sbjct: 106 VFTEFISKCPCLEDLVVEEGGFIGGETGFTLSVEVTEMTEI 146
>03_02_0039 -
5213699-5214775,5214815-5215093,5215300-5215776,
5216073-5216438
Length = 732
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 231 KVIVVKHGQDVTIPCKVTGLPAPKVVWSHNAKPLSGGRATVS 356
+ +VVKHG+ VT P + + H +PLSG A V+
Sbjct: 265 QAVVVKHGEAVTPPSRQDA--TKNITDVHKHQPLSGEHAIVA 304
>12_02_0298 + 17041206-17041712
Length = 168
Score = 27.1 bits (57), Expect = 8.5
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +3
Query: 297 PKVVWSHNAKPLSGGRATVSDSGLVIKGVQKG 392
P WS + KP G A+ G++++ ++G
Sbjct: 135 PNSAWSKSGKPTEAGGASARKGGVLVRKEERG 166
>03_02_0052 +
5285061-5285106,5285711-5285754,5286317-5286539,
5286664-5286827,5286918-5288144
Length = 567
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +1
Query: 283 PVCQRPRSSGAITRSL*AVAGLRSVTAVWSSKAYKRVTRDTTAAELLTSTEINTSRPFYK 462
P P+ G + R+ AGL WS+ Y + ++ A + N +RP+
Sbjct: 33 PEPPEPQYGGGVVRNADFSAGLHG----WSAFGYGSLAEGSSPAGNRYAVATNRTRPYQS 88
Query: 463 LTKEVTM-NDT 492
++++V + NDT
Sbjct: 89 VSQKVLLQNDT 99
>01_06_1200 -
35362412-35362432,35362526-35362715,35362799-35362899,
35362985-35363116,35363204-35363302,35363493-35363568,
35363649-35363941,35364032-35364160,35364332-35364480,
35364562-35364633,35364728-35364776,35365039-35365107,
35365201-35365256,35365357-35365429,35365508-35365584,
35365847-35365934,35366086-35366259,35366358-35366473,
35366681-35366984,35367084-35367146,35367224-35367286,
35367393-35367506,35368672-35368675,35368894-35368952,
35369024-35369098,35369691-35369798,35372331-35372792
Length = 1071
Score = 27.1 bits (57), Expect = 8.5
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Frame = +3
Query: 21 FKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGEYTCEVDNGVGKPQKHSL---KL 191
FKN D + T + FK+ LP+ G + + KP +L
Sbjct: 666 FKNSSDERFSASAIATAAAAVKHVAIKFKSRLPQFNGSENVDRAVDMFKPSYKNLFPQDN 725
Query: 192 TVVSAPKYEQKPEKVIVVKHGQDVTIPCKVTGLPAPKV 305
+S E PE++I +KH + T +G+ +V
Sbjct: 726 AGISFHSVEDTPEELIQIKHNHEGTARTPNSGIIKKRV 763
>01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008
Length = 749
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 358 TAVWSSKAYKRVTRDTTAA 414
+A W+ K YK +T D TAA
Sbjct: 614 SAAWTEKRYKELTADVTAA 632
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,035,612
Number of Sequences: 37544
Number of extensions: 307834
Number of successful extensions: 887
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -