Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P06
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0908 + 22507565-22507810,22507925-22508872,22509314-225103...    30   0.72 
02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354     29   1.7  
05_01_0150 + 1000613-1001275                                           27   6.7  
09_02_0578 + 10869627-10869702,10870489-10870555,10870813-108709...    27   8.8  
07_03_0831 - 21810002-21810319,21810423-21810573,21810660-218108...    27   8.8  

>07_03_0908 +
           22507565-22507810,22507925-22508872,22509314-22510337,
           22510425-22510477
          Length = 756

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = -3

Query: 366 LNSFGK*SLTMFVPNMFHSL*AYSTMFLLPSE 271
           LN+ GK  LT FVPN  H L   STM +L ++
Sbjct: 183 LNTNGKYRLTEFVPNHNHQLATASTMHMLKAK 214


>02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354
          Length = 847

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +2

Query: 113 NYEELSPLNNINSYEQLYDSVVVGDYKAAVMKTLRLENDGKGEVINLVVNRLLSEGKRNI 292
           N+  LS  + + SY +  + +++ DY   VM    ++     EVI+ V+NRL  + K  +
Sbjct: 559 NFRRLSVDHIVPSYRKSDNRLILLDYDGTVMPEGSIDKAPSNEVIS-VLNRLCEDPKNRV 617


>05_01_0150 + 1000613-1001275
          Length = 220

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -2

Query: 214 EGLHYCSLVVADNYTVVQLFVRVDVIEWRKLFVVNKCNREVA*RCKGRLR 65
           EG +YCS  V D+Y+  Q+++R      +K  V     R +A  C GR+R
Sbjct: 79  EGWYYCSPRVVDSYSCRQIYLRSYTFSKKKETVP---ERTMA--CLGRVR 123


>09_02_0578 +
           10869627-10869702,10870489-10870555,10870813-10870963,
           10871043-10871111,10871992-10872030,10872113-10872186,
           10872281-10872347,10872902-10873075,10873169-10873852
          Length = 466

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 272 SEGKRNIVEYAYKLWNMFGTNIV-KDHFPKEF 364
           S+G + I +    L N+FG N+V KD F K F
Sbjct: 120 SDGGKGITDLKPVLQNIFGENLVEKDEFLKTF 151


>07_03_0831 -
           21810002-21810319,21810423-21810573,21810660-21810897,
           21811011-21811221,21811336-21811559,21811696-21811806,
           21813265-21813636,21813810-21814782
          Length = 865

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 275 EGKRNIVEYAYKLWN 319
           EG  NIV YA++LWN
Sbjct: 752 EGSLNIVGYAWQLWN 766


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,700,923
Number of Sequences: 37544
Number of extensions: 163219
Number of successful extensions: 411
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)