Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P04
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    66   4e-12
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...    64   2e-11
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    26   5.0  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    25   8.8  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   8.8  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    25   8.8  

>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 28/42 (66%), Positives = 36/42 (85%)
 Frame = +3

Query: 465 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFQGSI 590
           I+KKRTK F RHQSDR+ ++  +WRKPRGID+ VRRRF+G+I
Sbjct: 6   IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTI 47


>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 28/42 (66%), Positives = 35/42 (83%)
 Frame = +3

Query: 465 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFQGSI 590
           IVKKRTK F RHQSD + ++  +WRKPRGID+ VRRRF+G+I
Sbjct: 6   IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTI 47


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 192 PSLQWPRPRLWLKENNH 242
           PS++W  PR WLK   +
Sbjct: 192 PSVKWRMPRFWLKRRTN 208


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 513 YDKLKRNWRKPRGIDNRVRRRFQGSILD 596
           Y  L + W  P  ID+R + +  G  LD
Sbjct: 100 YGALPQTWEDPNVIDSRTKMKGDGDPLD 127


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 79  CRLRLRYGDRFGGAVESLLGIGESWPENERRSHK 180
           C LRL+      G +E LL   +S  E +  SHK
Sbjct: 308 CSLRLKELQNSNGELEKLLEAAQSSFEEQLESHK 341


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -1

Query: 506 RLVTNKSFRPLFDDCRSVNRSDS---HFKLFH*E 414
           R++ ++++RPL DD   + R  S   H KL H E
Sbjct: 385 RIINHENYRPLMDDIEILLRDQSFVGHPKLEHLE 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,386
Number of Sequences: 5004
Number of extensions: 43115
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)