Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_P04
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245...    63   2e-10
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841     63   2e-10
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078...    63   2e-10
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848...    37   0.015
08_02_0075 - 11953723-11956203,11958213-11958512                       29   3.9  
05_01_0395 + 3118480-3119097,3119699-3119989,3120063-3120114,312...    29   3.9  
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428...    28   5.2  

>09_04_0633 -
           19123930-19124009,19124240-19124344,19124453-19124543,
           19124647-19124709,19126318-19126368,19126878-19126962,
           19127102-19127283,19128493-19128582
          Length = 248

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 30/53 (56%), Positives = 39/53 (73%)
 Frame = +3

Query: 435 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFQGSIL 593
           MA+ P+    IVKKR K+F R  SDRY  LK +WR+P+GID+RVRR+F+G  L
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTL 52


>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
          Length = 133

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 30/53 (56%), Positives = 39/53 (73%)
 Frame = +3

Query: 435 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFQGSIL 593
           MA+ P+    IVKKR K+F R  SDRY  LK +WR+P+GID+RVRR+F+G  L
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTL 52


>09_04_0630 +
           19104678-19105463,19106169-19106348,19107775-19107864,
           19108777-19108958,19109968-19109974,19111763-19111833,
           19112188-19112224,19112433-19112603
          Length = 507

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 29/55 (52%), Positives = 40/55 (72%)
 Frame = +3

Query: 429 FKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFQGSIL 593
           ++M + P+    IVKKR K+F R  SDRY  LK +WR+P+GID+RVRR+F+G  L
Sbjct: 321 YEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTL 374


>08_02_1315 +
           26083856-26083945,26084093-26084226,26084753-26084819,
           26085011-26085192,26085315-26085444
          Length = 200

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 13/21 (61%), Positives = 19/21 (90%)
 Frame = +3

Query: 531 NWRKPRGIDNRVRRRFQGSIL 593
           +WR+P+GID+RVRR+F+G  L
Sbjct: 99  SWRRPKGIDSRVRRKFKGCTL 119



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +3

Query: 435 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 527
           MA+ P+    IVKKR K+F R  SDRY  LK
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30


>08_02_0075 - 11953723-11956203,11958213-11958512
          Length = 926

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 510 RYDKLKRNWRKPRGIDNRVRRRFQGSILDAQHWS 611
           RY +L+    KP+ +   + + +   +LD QHWS
Sbjct: 628 RYLELRCTSDKPKSLPEAICKLYHLQVLDVQHWS 661


>05_01_0395 +
           3118480-3119097,3119699-3119989,3120063-3120114,
           3120395-3120546
          Length = 370

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -2

Query: 205 HCSDGWTSTYDCVSHSLANFLQFLEGIPRRRRNGPHSEDASDNQQNNFSEI 53
           HCS G  ++   V+ +   FLQ L+  PRR +  PH    SD  + + S +
Sbjct: 194 HCSSGCINSL--VAEARIKFLQLLDHPPRRDQPPPHLCLGSDRARTHPSSL 242


>10_08_1023 - 22341815-22342042,22342179-22342247,22342717-22342840,
            22343193-22343317,22343815-22344276,22344357-22344700,
            22345061-22345406,22345492-22345941,22346760-22347051,
            22347171-22347515,22347611-22347834,22348072-22348563,
            22348664-22349056,22349601-22349741,22349845-22350207,
            22350494-22352683,22353298-22353360,22353434-22353535,
            22353672-22354027,22354326-22354413,22354517-22354750,
            22355508-22355975
          Length = 2632

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 607  QCWASSIDPWKRLRTL 560
            +CWAS +  WKRLR +
Sbjct: 1255 KCWASGMSDWKRLRDI 1270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,060,339
Number of Sequences: 37544
Number of extensions: 269694
Number of successful extensions: 677
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)