Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_O24
(380 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 1.3
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 26 1.7
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 26 1.7
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 26 2.3
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr... 25 4.0
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 25 5.3
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 5.3
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 5.3
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 24 9.3
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 24 9.3
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.6 bits (56), Expect = 1.3
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +2
Query: 155 ERVQVNMNNITSLGRHIQRGSKSNELLIKAAREMASTENQMESADENLKKMQLISVHIGY 334
ER +V + L I + + NELL K + + ++ + ++ + SVH
Sbjct: 1502 ERKKVMQQEVLRLRSRIAKELQKNELLRKQNQVLQDQVKALQETVVSSEEAESASVHADT 1561
Query: 335 Q-YENIHKSAQVLS 373
+ EN+ K+ ++LS
Sbjct: 1562 KDLENLKKTEEMLS 1575
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 26.2 bits (55), Expect = 1.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 155 ERVQVNMNNITSLGRHIQRGSKSNELLIKAAREMASTENQ 274
E V + + +L +Q + S ELLIK ++ STE++
Sbjct: 972 EGVFSTLITVDNLDAQVQSCADSTELLIKVLSDLGSTEDE 1011
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 26.2 bits (55), Expect = 1.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 218 KSNELLIKAAREMASTENQMESADENLKKMQLISVHIGYQ 337
KSN LL+K + S N +E + L+ Q + ++ YQ
Sbjct: 161 KSNGLLVKPGMDQLSLINGLEEPPKELQSHQSVELYRLYQ 200
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 25.8 bits (54), Expect = 2.3
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 203 IQRGSKSNELLIKAAREMASTENQMESADENLKKMQLISVHIGYQYENIHKSAQVLS 373
I++GS + L+ K + + + E KK+ I HIG + A+VLS
Sbjct: 29 IKQGSATVGLVSKTHAVLVALKRNAEELSSYQKKLIRIDDHIGIAIAGLAPDARVLS 85
>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 514
Score = 25.0 bits (52), Expect = 4.0
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +1
Query: 10 SWSLVLADLTYYTYCY 57
+W+ +L+ +TYY Y Y
Sbjct: 236 NWARILSQITYYLYSY 251
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 24.6 bits (51), Expect = 5.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 161 PFQLIFVLILRIKNGRCSMTPKSLHRCLLYR 69
P+ L VL R +GRCS +SL +LY+
Sbjct: 46 PYHL-HVLDSRYADGRCSAAMRSLSNYVLYK 75
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 5.3
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = +2
Query: 143 QRLAERVQVNMNNITSLGRHIQRGSKSNELLIKAAREMASTENQMESADENLKKMQLISV 322
++L E+ N+ + R ++ K +L+ E+ S + + NL+K+Q +
Sbjct: 274 EKLKEKEGSIRRNLLAFDRKVR---KQEKLIASKRPELISIAEKALESKSNLRKIQRKAA 330
Query: 323 HIGYQYENIHKSAQVL 370
I Y + + QVL
Sbjct: 331 EIEKDYSDQASTLQVL 346
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 24.6 bits (51), Expect = 5.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 212 LFVCVDLMMLYCSYLLEPFQLIFVLILRIKNG 117
L + + L+ + L PF +F+ ILR +NG
Sbjct: 443 LLWATEAIPLFVTSFLVPFMTVFLKILRDENG 474
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 23.8 bits (49), Expect = 9.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 212 GSKSNELLIKAAREMASTENQMESADEN 295
GS SN+ I AARE +ME+ N
Sbjct: 196 GSVSNKKSIAAAREAEQKRKEMENRRRN 223
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 23.8 bits (49), Expect = 9.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 314 LVAFSLSFHLHSPFDSLWMP 255
L F + F+L SPF + W P
Sbjct: 273 LPGFVVVFNLQSPFQNNWFP 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,433,028
Number of Sequences: 5004
Number of extensions: 25640
Number of successful extensions: 70
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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