Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_O24
         (380 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   2.1  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    21   3.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   4.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    20   8.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   8.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   8.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   8.5  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 125 KNGRCSMTPKSLHRCLLYRL 66
           +N R ++ PK +  C+L+ L
Sbjct: 207 ENSRLALKPKDVSNCVLFAL 226


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 42

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +1

Query: 37 TYYT-YCYYTNSL*SKHRCNDF 99
          TY+  YC +   L  K++CN F
Sbjct: 16 TYFQQYCLHHKILIKKNKCNAF 37


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 67  YLYSNSTYSMLNQ 29
           Y+Y +STY  +NQ
Sbjct: 283 YVYEDSTYDDINQ 295


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 146 FVLILRIKNGRCSMTPKSLHRCLL 75
           F+L+  +  G  +M    ++ CLL
Sbjct: 466 FILMTTVNEGNNNMAATYMNECLL 489


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 287 LHSPFDSLWMPSHV 246
           LH P D +W P  V
Sbjct: 103 LHVPSDHIWRPDIV 116


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 287 LHSPFDSLWMPSHV 246
           LH P D +W P  V
Sbjct: 103 LHVPSDHIWRPDIV 116


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 287 LHSPFDSLWMPSHV 246
           LH P D +W P  V
Sbjct: 99  LHVPSDHIWRPDIV 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,627
Number of Sequences: 438
Number of extensions: 1912
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)