Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_O23
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy...    26   3.5  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    25   4.6  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    25   6.1  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   8.0  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   8.0  

>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 418 WSLNCGPWTVIC 453
           W LN G WTV+C
Sbjct: 75  WGLNVGFWTVVC 86


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 263 LENQNLGCVFTILDHIVT*HQMGLGSKQLAY 355
           L +Q L  VFT L  +   H+  L  KQL Y
Sbjct: 448 LTHQTLPNVFTQLSELSKCHEASLAEKQLTY 478


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 436 PWTVICADRDFANSF 480
           PWT +C +  FAN+F
Sbjct: 328 PWTGLCYESGFANTF 342


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 155 KNKCMVVGHFLTIYACVDITLK 220
           K +C+V G F+ +Y+  D  L+
Sbjct: 438 KMRCVVAGRFVNVYSASDYVLQ 459


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 197 RILLENALLPCIYFSTLIYLKIIIVNTRKKN 105
           R  LEN +LPC+ F  + +  +  + T  K+
Sbjct: 800 RDCLENCVLPCVPFLGVYFTDLTFLKTGNKD 830


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,979,849
Number of Sequences: 5004
Number of extensions: 38707
Number of successful extensions: 54
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)