Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_O22
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    27   1.6  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    25   4.7  
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    25   6.3  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   6.3  
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    25   8.3  
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   8.3  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    25   8.3  

>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 162 QKPVRKAKATLIPPTLDAL-EPVPVVS 85
           QK   KA A   PP+LDA+ EP+PV S
Sbjct: 635 QKVDDKADALTKPPSLDAVKEPIPVPS 661


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 19  LARDARRYRTETVD*KHIGKRFRHNWNRFKSI 114
           +A+  R+ R  T + + + KRFR  + R+K++
Sbjct: 454 IAKKRRQQRYTTEEMRALAKRFRETYPRYKNL 485


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
 Frame = +3

Query: 102 VQEHRELV--V*ESPWLSAQASVTSRNPRRFASPD-VRHRDSRQDRY 233
           ++E +E V  V ++P+  A+AS  SRNP+ F  PD V H+   Q+R+
Sbjct: 253 IEEWKESVLDVLDTPFDEAKAS--SRNPKPFEFPDGVTHKFG-QERF 296


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -1

Query: 335 SLSKG-NPRGIVSK-HTLHRQAYLAFIVDISIDGK-TIPVLTGV 213
           +L +G +P+ +  K H LH++ Y  F +D    G+ T P  TG+
Sbjct: 280 ALEEGVSPKELCDKYHALHKEVYDWFEIDFDHFGRTTTPKQTGI 323


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 75  SNMFLVHGLCSITPCISSELRT 10
           SN+ LV G+C +T  I  E+ T
Sbjct: 154 SNLLLVFGMCLVTTGIRREITT 175


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 491 WSESKYVRSSFFITISDMSISLMVL 417
           W++ K + S +F T+S     LMVL
Sbjct: 195 WAKRKQINSPYFGTLSSYGYVLMVL 219


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 176 VPRGNRSLCGKPRRLLYHQLSMLLNLFQLCRNLFPI 69
           + RG  S C +  R LY  L +  +   +C+ L PI
Sbjct: 368 ISRGVLSFCDQAIRDLYQILEVEFHPLSICKKLQPI 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,599
Number of Sequences: 5004
Number of extensions: 42342
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)