Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_O22
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1069 - 27345207-27345488,27345746-27346078,27346252-273470...    31   0.51 
10_07_0193 - 13954819-13954950,13955340-13955375                       29   2.1  
05_03_0466 - 14362190-14362312,14362411-14362658,14363289-14363664     29   2.7  
03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575...    29   2.7  
01_06_0905 + 32880368-32880633,32882439-32882568,32882704-328828...    28   3.6  
11_06_0126 - 20378611-20379719,20380081-20381239                       28   4.7  
05_07_0291 - 29020032-29020660,29020747-29020817,29021020-290211...    28   4.7  
01_06_1466 + 37559600-37559795,37560597-37560730,37561252-375614...    28   4.7  

>06_03_1069 -
           27345207-27345488,27345746-27346078,27346252-27347041,
           27347153-27347351,27347522-27347667,27347823-27348094,
           27348161-27348262,27348351-27348470,27348576-27348729,
           27348986-27349114,27349554-27349900
          Length = 957

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -3

Query: 243 W*NHTGLDGSHDDEHLERQTAEGSER*QKPVRKAKATLIPPTLDALEPVPVVSK 82
           W N   LD  H  E L+R  A+  ER +     A A L   + DAL  VP+  +
Sbjct: 19  WIN-AALDARHPSEPLDRFLADAEERLRSAADDAAAALERDSADALRRVPLACR 71


>10_07_0193 - 13954819-13954950,13955340-13955375
          Length = 55

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 191 GKPPRVPRGNRSLCGKPRRLLYHQLSMLLNLFQL 90
           G+ PR+PR    LC  P R +YH   +  +++++
Sbjct: 19  GRLPRLPRHQEFLCFHPHRRVYHAQVIAASVYKV 52


>05_03_0466 - 14362190-14362312,14362411-14362658,14363289-14363664
          Length = 248

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = -3

Query: 474 REVIFLHYHIGHVHIFDGVRHSR*VLSVYLHVGKLHVVCEESRH-----INFPIEGES*G 310
           REV FL +H+  + +F GV     +++    +G  H++    R      +  P+      
Sbjct: 112 REVTFLPFHVSAMRVFRGVYS---IIAHGFQIGLAHLIVRPQRRAAARLLLLPLVAAR-- 166

Query: 309 HCVETYTPPTSVSRLHSRHI 250
            C     PP+S SR HSR +
Sbjct: 167 QC--RSPPPSSSSRRHSRRL 184


>03_02_0124 -
           5749183-5749773,5750628-5751160,5751191-5753035,
           5753632-5753820,5753911-5754013,5754087-5754269,
           5754392-5754484,5755031-5755219,5756133-5756327
          Length = 1306

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 144 AKATLIPPTLDALEPVPVVSKPFSNMFLVHGLCS 43
           A A   P     + P  ++  P+SNM L+HG  S
Sbjct: 648 APAAFPPKHFAGIPPTSLIGAPWSNMHLIHGYVS 681


>01_06_0905 +
           32880368-32880633,32882439-32882568,32882704-32882894,
           32883625-32883852,32884062-32884224,32884343-32884416,
           32884484-32884601,32884722-32884788,32885152-32885223,
           32885350-32885513
          Length = 490

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 272 LAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 177
           +A +VD  ++G   P + G+  T +  G PP+
Sbjct: 71  VAGVVDFPVEGSANPFMVGLYFTRVKLGSPPK 102


>11_06_0126 - 20378611-20379719,20380081-20381239
          Length = 755

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/68 (27%), Positives = 35/68 (51%)
 Frame = -1

Query: 338 ISLSKGNPRGIVSKHTLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPRVPRGNR 159
           + LS+ N  G +   TL   +YL+ + D+S +  +  + +G  +  ++  + P +  GN 
Sbjct: 644 LELSRNNLSGEIPS-TLSNLSYLSNL-DLSYNNLSGTIPSGSQLGTLYM-EHPDMYNGNN 700

Query: 158 SLCGKPRR 135
            LCG P R
Sbjct: 701 GLCGPPLR 708


>05_07_0291 -
           29020032-29020660,29020747-29020817,29021020-29021194,
           29021451-29021571,29021686-29022036
          Length = 448

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 257 DISIDGKTIPVLTGVTMTNIW 195
           D S D   +PV+ GVT+ N+W
Sbjct: 360 DASYDPSKLPVVDGVTIKNVW 380


>01_06_1466 +
           37559600-37559795,37560597-37560730,37561252-37561437,
           37562538-37562753,37563008-37563119,37563493-37563663,
           37564621-37564684,37565555-37565685,37566263-37566393,
           37566843-37566945,37567322-37567398,37567813-37567860,
           37568162-37568311,37568810-37569010
          Length = 639

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 398 FLYTCTSVNFMLFVKKVGI*ISLSKGNPRGIVSKHTLHRQAYLAFIVDISIDGKTI 231
           ++   T  NF  FVK  GI      G+PR +    T ++   LA   +IS+  K +
Sbjct: 249 YVRLATHANFRTFVKSAGIDFYPLGGDPRILAQYMTKNKGFCLAGPTEISVQRKQL 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,774,809
Number of Sequences: 37544
Number of extensions: 284714
Number of successful extensions: 740
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)