Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_O22
(494 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16842-1|AAA20046.1| 480|Homo sapiens ubiquinol-cytochrome c re... 30 3.8
D26485-1|BAA05495.1| 480|Homo sapiens core I protein protein. 30 3.8
BC009586-1|AAH09586.1| 480|Homo sapiens ubiquinol-cytochrome c ... 30 3.8
Y19062-1|CAB64341.1| 479|Homo sapiens 39k3 protein protein. 29 8.9
BC110447-1|AAI10448.1| 479|Homo sapiens staufen, RNA binding pr... 29 8.9
BC008369-1|AAH08369.1| 538|Homo sapiens STAU2 protein protein. 29 8.9
AK002152-1|BAA92111.1| 570|Homo sapiens protein ( Homo sapiens ... 29 8.9
AF459098-1|AAN37927.1| 538|Homo sapiens double-stranded RNA-bin... 29 8.9
AF459097-1|AAN37926.1| 570|Homo sapiens double-stranded RNA-bin... 29 8.9
AB210014-1|BAE06096.1| 490|Homo sapiens STAU2 variant protein p... 29 8.9
>L16842-1|AAA20046.1| 480|Homo sapiens ubiquinol-cytochrome c
reductase core I protein protein.
Length = 480
Score = 30.3 bits (65), Expect = 3.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 138 PWLSAQASVTSRNPRRFASPDVRHRD 215
PW A+ +V + P RF ++RHRD
Sbjct: 254 PWTYAEDAVPTLTPCRFTGSEIRHRD 279
>D26485-1|BAA05495.1| 480|Homo sapiens core I protein protein.
Length = 480
Score = 30.3 bits (65), Expect = 3.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 138 PWLSAQASVTSRNPRRFASPDVRHRD 215
PW A+ +V + P RF ++RHRD
Sbjct: 254 PWTYAEDAVPTLTPCRFTGSEIRHRD 279
>BC009586-1|AAH09586.1| 480|Homo sapiens ubiquinol-cytochrome c
reductase core protein I protein.
Length = 480
Score = 30.3 bits (65), Expect = 3.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 138 PWLSAQASVTSRNPRRFASPDVRHRD 215
PW A+ +V + P RF ++RHRD
Sbjct: 254 PWTYAEDAVPTLTPCRFTGSEIRHRD 279
>Y19062-1|CAB64341.1| 479|Homo sapiens 39k3 protein protein.
Length = 479
Score = 29.1 bits (62), Expect = 8.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 186 TAEGSER*QKPVRKAKATLIPPTLDALEPVPVVSKP 79
+AEG +K +K AT + L L P+PVV KP
Sbjct: 217 SAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKP 252
>BC110447-1|AAI10448.1| 479|Homo sapiens staufen, RNA binding
protein, homolog 2 (Drosophila) protein.
Length = 479
Score = 29.1 bits (62), Expect = 8.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 186 TAEGSER*QKPVRKAKATLIPPTLDALEPVPVVSKP 79
+AEG +K +K AT + L L P+PVV KP
Sbjct: 217 SAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKP 252
>BC008369-1|AAH08369.1| 538|Homo sapiens STAU2 protein protein.
Length = 538
Score = 29.1 bits (62), Expect = 8.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 186 TAEGSER*QKPVRKAKATLIPPTLDALEPVPVVSKP 79
+AEG +K +K AT + L L P+PVV KP
Sbjct: 217 SAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKP 252
>AK002152-1|BAA92111.1| 570|Homo sapiens protein ( Homo sapiens
cDNA FLJ11290 fis, clone PLACE1009622, weakly similar to
MATERNAL EFFECT PROTEIN STAUFEN. ).
Length = 570
Score = 29.1 bits (62), Expect = 8.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 186 TAEGSER*QKPVRKAKATLIPPTLDALEPVPVVSKP 79
+AEG +K +K AT + L L P+PVV KP
Sbjct: 249 SAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKP 284
>AF459098-1|AAN37927.1| 538|Homo sapiens double-stranded
RNA-binding protein Staufen2 short isoform protein.
Length = 538
Score = 29.1 bits (62), Expect = 8.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 186 TAEGSER*QKPVRKAKATLIPPTLDALEPVPVVSKP 79
+AEG +K +K AT + L L P+PVV KP
Sbjct: 217 SAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKP 252
>AF459097-1|AAN37926.1| 570|Homo sapiens double-stranded
RNA-binding protein Staufen2 long isoform protein.
Length = 570
Score = 29.1 bits (62), Expect = 8.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 186 TAEGSER*QKPVRKAKATLIPPTLDALEPVPVVSKP 79
+AEG +K +K AT + L L P+PVV KP
Sbjct: 249 SAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKP 284
>AB210014-1|BAE06096.1| 490|Homo sapiens STAU2 variant protein
protein.
Length = 490
Score = 29.1 bits (62), Expect = 8.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 186 TAEGSER*QKPVRKAKATLIPPTLDALEPVPVVSKP 79
+AEG +K +K AT + L L P+PVV KP
Sbjct: 228 SAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKP 263
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,868,118
Number of Sequences: 237096
Number of extensions: 1504552
Number of successful extensions: 2919
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2916
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4479766258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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