Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_O22
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical ...    28   3.2  
U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helical...    28   4.3  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    28   4.3  
U11279-3|AAF99909.1|  423|Caenorhabditis elegans T box family pr...    27   7.5  
Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical
           protein B0212.1 protein.
          Length = 649

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 222 DGSHDDEHLERQTAEGS 172
           DGSH+DEH E++   GS
Sbjct: 332 DGSHEDEHFEKKIMPGS 348


>U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 3, isoform c
           protein.
          Length = 1310

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 74  EKGFDTTGTG-SRASRVGGIRVALAFRTGFCYLSEP 178
           E  +D T T  +R S   G+  + +FRTGF Y S P
Sbjct: 324 ETDYDVTVTWLNRYSPASGVSASKSFRTGFGYPSAP 359


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform a
            protein.
          Length = 2456

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 74   EKGFDTTGTG-SRASRVGGIRVALAFRTGFCYLSEP 178
            E  +D T T  +R S   G+  + +FRTGF Y S P
Sbjct: 1470 ETDYDVTVTWLNRYSPASGVSASKSFRTGFGYPSAP 1505


>U11279-3|AAF99909.1|  423|Caenorhabditis elegans T box family
           protein 2 protein.
          Length = 423

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 186 TAEGSER*QKP-VRKAKATLIPPTLDALEPVPVVSKP 79
           T+E SE  +KP V+K + ++ PP     + + ++SKP
Sbjct: 387 TSEDSEEAEKPEVKKEQKSVTPPKKGGFDVLDLLSKP 423


>Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical
           protein F25D7.3 protein.
          Length = 817

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 303 HNAPRIPLR*GNLYAYFLHKQHEVYRRASIQKGLID 410
           +N P IP+R GN YA  L    E + R S+Q  L+D
Sbjct: 350 NNFPGIPVRLGNFYASPLVDFKE-FMRKSLQLKLVD 384


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,639,041
Number of Sequences: 27780
Number of extensions: 242667
Number of successful extensions: 724
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)