Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_O18
(254 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 29 0.098
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 28 0.17
SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit L3... 25 2.1
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 24 2.8
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 24 3.7
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 23 4.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 23 4.9
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 23 4.9
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 23 6.4
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 23 6.4
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 23 6.4
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 23 8.5
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 23 8.5
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 29.1 bits (62), Expect = 0.098
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 150 CILGFTLSACFISRTRAVKPSLCSDSLSSTGVVPNVFL 37
CI GF ++ + +RTR + PS +LS T V+ FL
Sbjct: 325 CIAGFVVNEFYTTRTRIITPS-AFKTLSLTSVMVTSFL 361
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 28.3 bits (60), Expect = 0.17
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 150 CILGFTLSACFISRTRAVKPSLCSDSLSSTGVVPNVFL 37
CI GF ++ + +RTR + PS +LS + V+ FL
Sbjct: 325 CIAGFVVNELYTTRTRIIAPS-AFQTLSLSSVMVTSFL 361
>SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 103
Score = 24.6 bits (51), Expect = 2.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 101 ALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINL 220
AL+R A++ K S LP+++ I+ PSI N+
Sbjct: 2 ALLRGNSLAISQKMLSVFQASALPHISLRIFISPPSIANI 41
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 24.2 bits (50), Expect = 2.8
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -2
Query: 226 VDQVYDAWDVKVNGAIYVWQ 167
VD++YDAW N WQ
Sbjct: 56 VDEMYDAWKKDPNSVHASWQ 75
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 23.8 bits (49), Expect = 3.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 158 ISVLPNVNSSIYFDVPSII 214
I+VLP+++ S + D PSI+
Sbjct: 191 INVLPSISPSSFLDSPSIM 209
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 23.4 bits (48), Expect = 4.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 29 HSIKKTFGTTPVDD 70
HSI+KT+G T DD
Sbjct: 520 HSIRKTYGYTTHDD 533
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 23.4 bits (48), Expect = 4.9
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -2
Query: 223 DQVYDAWDVKVNGAI 179
DQ++DAWD + G +
Sbjct: 826 DQIFDAWDKERKGTL 840
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 23.4 bits (48), Expect = 4.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 177 TFGKTLITNCILGFTLSACFIS 112
+FG + I N ILG L C IS
Sbjct: 1157 SFGSSDIGNTILGDALQLCLIS 1178
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 23.0 bits (47), Expect = 6.4
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 68 DKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVN 181
+K S+H + + V + L V PN Q N+N
Sbjct: 257 EKRSDHLKSIQSEVSNLWNKLQVSPNEQSQFGDSSNIN 294
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 23.0 bits (47), Expect = 6.4
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -2
Query: 151 LHIGFYIECLFHLTYKSGEAFSML*FLIINRGSPECFLDAVP 26
+H+ + LF +T K G+ S L F + EC L P
Sbjct: 271 IHVSTLVTPLFQVTEKIGKNTSDLWFALCEIDGLECVLKYRP 312
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 23.0 bits (47), Expect = 6.4
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 8/32 (25%)
Frame = -3
Query: 99 VKPSLCSDSLSSTG--------VVPNVFLMLC 28
+KPS +D SSTG + PN+ ++LC
Sbjct: 341 IKPSYSADPSSSTGASLTESPGIPPNIVIILC 372
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 22.6 bits (46), Expect = 8.5
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 59 PVDDKESEHREGFTALVREMKQALN 133
P E + EG+ L EM ALN
Sbjct: 9 PTTTTEEDDEEGYEKLKEEMGSALN 33
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 22.6 bits (46), Expect = 8.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 241 LDVANVDQVYDAWDVKVNGAIYVWQNAD 158
LDV NVD V+ W + AI W N +
Sbjct: 500 LDVTNVDDVFYGW--FGDKAISGWSNTN 525
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,041,508
Number of Sequences: 5004
Number of extensions: 17042
Number of successful extensions: 48
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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