Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_O18
         (254 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   0.25 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             24   0.25 
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              22   1.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   2.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   2.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   5.5  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              19   7.2  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    19   7.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       19   9.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 0.25
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 53  TTPVDDKESEHREGFTALV 109
           T P+DD  S+  EGF A++
Sbjct: 150 TNPLDDSISQANEGFCAVI 168


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 24.2 bits (50), Expect = 0.25
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 53  TTPVDDKESEHREGFTALV 109
           T P+DD  S+  EGF A++
Sbjct: 145 TNPLDDSISQANEGFCAVI 163


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 1.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 1   DSFEYWIFLAQHQENIRDYPC 63
           DS E  I L   +EN R+Y C
Sbjct: 50  DSSEARIKLINEEENFRNYGC 70


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 18  DLSGTASRKHSGLPLLM 68
           D++G   +KH   PLLM
Sbjct: 131 DIAGLRKKKHKVNPLLM 147



 Score = 19.8 bits (39), Expect = 5.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 217 VYDAWDVKVNGAIYVW 170
           V+++W   + GAI  W
Sbjct: 472 VWNSWMPSIRGAIQQW 487


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 144 ICS*LSAFCQT*IAPFTLTS 203
           IC+ L+A CQ  +  F +TS
Sbjct: 644 ICTKLTADCQPGVTAFIVTS 663


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 99   VKPSLCSDSLSSTGVVPNVFL 37
            V  ++CSD  S  GV+ ++ +
Sbjct: 971  VNETVCSDYFSQGGVIESIMV 991


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +2

Query: 71  KESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSS 187
           + S++ E        MK+ LNV P  Q  + +   ++ S
Sbjct: 624 QSSKNSENSIMQRASMKENLNVYPEFQENVQLCSEISES 662


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 19.4 bits (38), Expect = 7.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 91  RLHRSCT*DETSTQCK 138
           RL R+C+ D + T+C+
Sbjct: 55  RLKRTCSGDISVTKCE 70


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 19.4 bits (38), Expect = 7.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 91  RLHRSCT*DETSTQCK 138
           RL R+C+ D + T+C+
Sbjct: 55  RLKRTCSGDISVTKCE 70


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +2

Query: 50  GTTPVDDK 73
           GTTP+D+K
Sbjct: 257 GTTPLDEK 264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,725
Number of Sequences: 438
Number of extensions: 989
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4511484
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)