Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_O15
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   6.3  
SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   6.3  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   8.3  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 383 LSKHIIPIQGSLVRAQYSSTLN 318
           LS  ++   G L+R+Q+S+TLN
Sbjct: 605 LSDSVVDTIGELLRSQFSNTLN 626


>SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 42  CFCFLYET*YIVKHKPKLFFKT*FTLIILPLSTDILMI 155
           C CFLY   +  +  P  F +  F+++ + +S D+  I
Sbjct: 34  CECFLYPKLFDSQRSPSPFLRWLFSVLGVLMSMDVFCI 71


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = -2

Query: 490 YLPICCISSYEIHILITHIL 431
           +LP+CC+  + +H+  + +L
Sbjct: 280 FLPVCCLDPHFLHLSFSGVL 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,823,770
Number of Sequences: 5004
Number of extensions: 32814
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)