Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_O14
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    27   1.2  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    27   1.6  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    26   2.1  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    26   2.8  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    25   4.8  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   6.4  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    24   8.5  

>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
 Frame = +1

Query: 208 YYLRINSQIKQIEKRYISWTSILCESKKKINLFENSYS--PFLLR*LMTSAARHI 366
           Y+++  ++ + ++KRY+S   I+  SKK++ LF + +   P + R L+ S  + I
Sbjct: 260 YFVKYKTEYEFLQKRYLSLARIMFVSKKEM-LFTSQFKEIPNVNRELIQSMKQEI 313


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 144 KKLETDFVKNYNYCLISTTGRILLT 218
           +K +TDF K+YN  +I T G I  T
Sbjct: 135 EKQKTDFEKSYNINIIDTPGHIDFT 159


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 202 EEYYLRINSQI-KQIEKRYISWTSILCESKKKINLFENSYSPFLLR 336
           E   L++N+   K +EKR     + + +   ++N FE  + PF ++
Sbjct: 169 ERQQLKLNNFFTKGVEKRIAPNENFVADKTDELNEFEKEFRPFFIK 214


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 205 EYYLRINSQIKQIEKR-YISWTSILCESKKKINLFENSYS 321
           E+Y R+   IK+ +KR ++S   I  E ++ IN   N+ S
Sbjct: 39  EFYQRLKKLIKKAQKRIFLSTLYIGKEERELINCLSNALS 78


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 315 LFPIPT*VTDDLGRSTYSVRGSVRTCGNSILR 410
           L P P+ + DDLG   + +    + CG   +R
Sbjct: 272 LHPTPSSIADDLGSLPHPIFRKTKHCGQQNIR 303


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 11   VKKLPPVQKTTPSRKAGKKLDLIKQF 88
            +  LP  Q  +PS+++GK   LI+ F
Sbjct: 1411 ISNLPSSQPGSPSKRSGKMEALIRNF 1436


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 7   ERQKTTTGSENNPVEKSR 60
           E   TT  S NNP+E SR
Sbjct: 579 ENLPTTRSSSNNPIEASR 596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,724,122
Number of Sequences: 5004
Number of extensions: 33604
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)