Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_O14
         (423 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33...    29   1.5  
12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,132...    28   3.6  
11_06_0046 - 19585032-19585109,19585198-19585278,19585460-195855...    28   3.6  
11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141...    28   3.6  
03_01_0296 + 2284385-2285629,2287632-2288594                           27   4.7  

>01_01_0047 +
           334809-334877,334966-335074,335159-335299,336337-336498,
           336577-336734,337180-337310,337385-337472,337587-337690,
           338346-338444,339060-339116,339262-339337,339519-339602,
           339969-340010,340128-340198,341516-341564,342370-342441,
           343149-343286,343393-343473,344166-344353,344591-345188,
           345274-345342,346729-346854,347048-347175,347986-348142,
           348342-348388,348472-348535,348691-348765,349292-349414,
           349797-349982,351179-351303,351390-351459,351974-352101,
           352585-352726,353065-353163,353239-353285,353598-353652,
           353758-353967,354686-354757,354836-354905,355231-355414,
           355521-355644,355732-355863,356252-356317,356805-356852,
           357572-357676,357728-357865,358097-358399,358482-358594,
           359082-359148,359236-359310,359395-359517,359610-359618,
           360156-360320,360401-360502,361545-361696,361794-361995,
           362079-362126,362215-362298,362613-362657,363302-363385,
           363890-363970,364044-364133,364217-364279,364824-364841,
           365238-365378,365494-365550,366091-366185,366275-366383,
           367067-367156,367308-367387,367480-367558,367742-367903,
           368005-368136,368335-368469,368553-368618,369317-369457,
           369575-369648,369685-369910
          Length = 2905

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 183 NNYNFLQNLFPVFLLTALKVQKCLTYQGKMIMNCFIKSSFL 61
           + +N L +  P+F  TAL V   L   G+MIM   + +SF+
Sbjct: 408 DTWNSLIHALPLFSTTALVVDSVLRLLGEMIMRDQVHASFV 448



 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 229  QIKQIEKRYISWTSILCESKKKINLFE 309
            QI  +E     WT ILC++++ ++L E
Sbjct: 1996 QISDLELLNKEWTFILCQTERNLDLLE 2022


>12_01_0179 -
           1319291-1319332,1319884-1320579,1322759-1323207,
           1323291-1324903,1324991-1325077,1326983-1327251
          Length = 1051

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -1

Query: 177 YNFLQNLFPVFLLTALKVQKCLTY 106
           +NFL +  PVFLLTAL +   L+Y
Sbjct: 125 FNFLLSSSPVFLLTALLLGALLSY 148


>11_06_0046 -
           19585032-19585109,19585198-19585278,19585460-19585501,
           19586058-19586149,19586243-19586312,19587140-19587223,
           19587696-19587770,19587878-19587949,19588082-19588331,
           19590224-19590291,19590380-19590460,19590642-19590683,
           19591240-19591331,19591425-19591494,19592322-19592405,
           19592878-19592952,19593060-19593131,19593264-19593305
          Length = 489

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = +3

Query: 144 KKLETDFVKNYNYCLISTTGRILLTN----KQSNKTNRKKIYFLDI 269
           K+    F+K Y+   +ST G +++TN    K+    ++ ++YF DI
Sbjct: 106 KEEARQFLKGYSGSHVSTVGSVVVTNLTTGKRLESLDKAEVYFHDI 151



 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = +3

Query: 144 KKLETDFVKNYNYCLISTTGRILLTN----KQSNKTNRKKIYFLDI 269
           K+    F+K Y+   +ST G +++TN    K+    ++ ++YF DI
Sbjct: 384 KEEARQFLKGYSGSHVSTVGSVVVTNLTTGKRLESLDKAEVYFHDI 429


>11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,
            1414639-1414725,1416244-1416411,1416785-1416958,
            1417662-1417720,1418132-1420154,1420549-1420647,
            1420998-1421796,1422101-1422120,1422446-1422513
          Length = 1827

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -1

Query: 177  YNFLQNLFPVFLLTALKVQKCLTY 106
            +NFL +  PVFLLTAL +   L+Y
Sbjct: 1172 FNFLLSSSPVFLLTALLLGALLSY 1195


>03_01_0296 + 2284385-2285629,2287632-2288594
          Length = 735

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 32  QKTTPSRKAGKKLDLIKQFIIIF 100
           +K+TP+   GK +DLI  F+I+F
Sbjct: 373 RKSTPNLVNGKNVDLIITFVIVF 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,026,109
Number of Sequences: 37544
Number of extensions: 171795
Number of successful extensions: 361
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)