Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_O11
(532 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy... 65 7e-12
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 30 0.25
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 28 1.00
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 1.3
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 26 3.0
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 26 3.0
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 26 3.0
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 26 3.0
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom... 26 4.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.0
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 4.0
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 25 5.3
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 25 5.3
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 25 7.0
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 25 9.3
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 25 9.3
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 25 9.3
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 9.3
>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 64.9 bits (151), Expect = 7e-12
Identities = 29/76 (38%), Positives = 46/76 (60%)
Frame = +1
Query: 61 SFNKASEHVRKITSQFSNNQLLELYGLFKQGTEGVCNIPKPGWFDSKGRKKWEAWKNLAD 240
+F +A+ V+++ ++++LL+LY LFKQ T G N KPG D KG+ KW AW+ L
Sbjct: 4 TFEQAAADVKELKETPNSDELLKLYALFKQATVGDNNTEKPGLLDLKGKFKWNAWEELKG 63
Query: 241 MESDEAKEKYILLVQK 288
++A +YI V +
Sbjct: 64 KSKEDAASEYISFVDE 79
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 29.9 bits (64), Expect = 0.25
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 2/139 (1%)
Frame = +1
Query: 34 DEEVTPLDISFNKASEHVRKITSQFSNNQLLELYGLFKQGT--EGVCNIPKPGWFDSKGR 207
D E+ D+ K K+ +S+ E L Q E C+I GWFD K
Sbjct: 132 DHEIDIHDVDLAKLPFQDEKLGIVYSDEHAQEESNLLLQFNCPEDACDITCKGWFDLKLH 191
Query: 208 KKWEAWKNLADMESDEAKEKYILLVQKYDPNWSELSENNVPGSKEAWVAVSSLRYSPEPE 387
K + K D+ K K + + + L+++N G + + + ++ + P+ E
Sbjct: 192 AKVKHHKFFCDL---CVKNKKVFTHEHTLFSKKGLTKHNEVGDQGSDLEITGFKGHPKCE 248
Query: 388 LIHNDMSILDAARENCHER 444
+ D ++C E+
Sbjct: 249 FCNTHFYDDDELFKHCREK 267
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 27.9 bits (59), Expect = 1.00
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 58 ISFNKASEHVRKITSQFSNNQLLELYGL 141
+SF+KA+E+V ++ S NQ+ +LY L
Sbjct: 126 LSFDKAAEYVTQLHSDSIINQMFDLYTL 153
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 27.5 bits (58), Expect = 1.3
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = -3
Query: 434 QFSLAASSIDMSL*ISSGSGEYLNDDTATQASLLPGTLFSDSSLQLGSYF*TNKMYFSFA 255
QF++ + S SS S ++ T++ +S P T S SS S ++K S +
Sbjct: 107 QFNIVEGAASSSSSSSSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSS 166
Query: 254 SSDSISA 234
S S S+
Sbjct: 167 KSSSRSS 173
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 409 ILDAARENCHERVTELLAKHPSLREERDENNLTALHWAA 525
++ A R E + E++ K P RDEN + LH A+
Sbjct: 6 LIYACRAADEELLDEIIEKCPQELSRRDENGNSGLHMAS 44
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 109 SNNQLLELYGLFKQGTEGVCNIPKPGWFDSKGRKKWEAWKNLADMESDEA 258
S N L+ L T G+C+ KP WF K RK + ++ E D++
Sbjct: 242 SRNVFLDTMSLHV-ATHGMCSRQKPTWF--KARKAYIRSQSTETSEDDDS 288
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = -2
Query: 276 QNVFFLRLVRFHISKVLPGLPFFTTLAVEPTRFWYITHTF 157
QN F ++ H K++P T L F + HTF
Sbjct: 269 QNFEFENPIKLHFDKIIPYFSRLTVLTFSNRAFIFPDHTF 308
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 3.0
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +2
Query: 125 WNYMGCSNKVQKVCVIYQN 181
WNY+ ++Q +C++ QN
Sbjct: 476 WNYLASCEEIQIICLLMQN 494
>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 470
Score = 25.8 bits (54), Expect = 4.0
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +1
Query: 205 RKKWEAWKNLADMESDEAKEKYILLVQKYDPNWSELSENNVPGSKEAWVAVSSLRYSPEP 384
RKK+ D+ E + Y L ++KYD NW K+A+ +SS + P
Sbjct: 224 RKKFLTLAKKYDIIIVEDEPYYFLQMEKYDANWKP--------DKQAF-NISSFKKKLIP 274
Query: 385 ELIHND 402
L+H D
Sbjct: 275 SLLHLD 280
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 4.0
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Frame = -3
Query: 530 LSAAQCSAVRLFSSRSSRKLGCLANSSVTLS*QFSLAASSIDMSL*ISSGSGEYLNDDTA 351
L+++ ++ L SS ++ SS T S S AAS+ S ++S S TA
Sbjct: 149 LASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATA 208
Query: 350 TQASLLPGTLFSDS--SLQLGSYF*TNKMYFSFASSDSISA 234
T +S L T S+S S L S N + A+S SIS+
Sbjct: 209 TSSS-LSSTAASNSATSSSLASSS-LNSTTSATATSSSISS 247
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 190 FDSKGRKKWEAWKNLADMESDEAKEKYILLV 282
FD+ RKKW W L+ Y LLV
Sbjct: 548 FDNTPRKKWNRWNQLSAPSWGTVYPVYSLLV 578
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 196 SKGRKKWEAWKNLADMESDEAKEKYILLVQKYDPN 300
S G+K W E++E K I L +Y PN
Sbjct: 145 SPGQKLTRTWTATGGAEANEGVIKLIRLATRYKPN 179
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 406 SILDAARENCHERVTELLAKHPSLREERDENNLTALHWAA 525
S+ AA + + V L++ DE TALHWAA
Sbjct: 3 SLFLAASQGELDTVKNLISSEKIDVNATDEGGATALHWAA 42
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 202 GRKKWEAWKNLADMESDEAKEKYILLVQKY 291
G W +WK+L K+ I+LV KY
Sbjct: 282 GENMWSSWKHLTQGYDHLFKKVTIVLVGKY 311
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 24.6 bits (51), Expect = 9.3
Identities = 20/99 (20%), Positives = 36/99 (36%)
Frame = +1
Query: 22 SDFSDEEVTPLDISFNKASEHVRKITSQFSNNQLLELYGLFKQGTEGVCNIPKPGWFDSK 201
++F DEE ++ K ++ + ++ LE K V P P F
Sbjct: 533 TEFLDEEGRTYQSNWQKETDKKNSLVNEAEEKNDLEAIEAAKNFH--VNGKPSPTRFAWV 590
Query: 202 GRKKWEAWKNLADMESDEAKEKYILLVQKYDPNWSELSE 318
K W W D++ + + I+ D W E ++
Sbjct: 591 NGKFWAQWLRKFDIDIEATGPRVIVYNAAQDIYWDETAK 629
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 24.6 bits (51), Expect = 9.3
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -1
Query: 448 SLSRDSFLWLHQVLTCHYE*ALVQVNISMMILQPKLLYCQAHYFQTAHS 302
S+S S + LH C++ +Q +I + + + H F+ HS
Sbjct: 157 SISNCSSVNLHNATKCNFTFPTIQGSIHLSDINDSTICVSCHQFRLHHS 205
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 34 DEEVTPLDISFNKASEHVRKITSQFSN 114
DE+V +D ++ ++HVR +T S+
Sbjct: 290 DEDVDGIDTAYRVVADHVRTLTFAISD 316
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 24.6 bits (51), Expect = 9.3
Identities = 12/54 (22%), Positives = 24/54 (44%)
Frame = +1
Query: 295 PNWSELSENNVPGSKEAWVAVSSLRYSPEPELIHNDMSILDAARENCHERVTEL 456
P +E++E+N+ E W + E E + S L+ R + ++ E+
Sbjct: 900 PEPTEMAESNISEESEGWKLIEQPNVESEIEDQDEESSDLNGKRRSTPPKIHEV 953
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.129 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,308
Number of Sequences: 5004
Number of extensions: 45389
Number of successful extensions: 156
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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