Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_O10
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.3  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    26   4.0  
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c...    25   6.9  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         25   6.9  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   9.1  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    25   9.1  

>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 203

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 508 DQYLK*NESASNKISFKHGNRSSYIFFRKFPIN 410
           D++LK N    N  S  H NR SY+  +  P+N
Sbjct: 3   DRFLKENTEIINLSSSIHPNRDSYLDSQSDPLN 35


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 2   YYVSHCRKDAKLSRAFVSLDELMFVSREPREWNCGTAVRKPLPQVTVALT 151
           +Y  H     KLSR F S   + +      + +  TA   P PQV   L+
Sbjct: 23  FYHQHYEHTGKLSRTFFSPTHIKYNRLSTLDTSTSTANAAPDPQVLTFLS 72


>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +2

Query: 32  KLSRAFVSLDELMFVSREPREWNCGTAVRKPLPQVTVALTGFNIIIIKCSL 184
           K SRAF+    L+FVS         T V     +V     G NI  + C++
Sbjct: 174 KFSRAFIKAFALIFVSELGDRSQIATIVMSAKEKVLDVFIGVNIGHMLCTM 224


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 65  IHLKRQTPATIWRPSYNETRS 3
           +H++ QTP  +WR  Y+   S
Sbjct: 220 LHVEHQTPENLWRLPYSSFHS 240


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 402 CPEFIGNFLKNMYEERLPCLNEILFDAL 485
           C E   +F K+ Y+E    L  + FDAL
Sbjct: 864 CIELYTDFYKSAYKEVFDSLQRLQFDAL 891


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -2

Query: 228 APNNEPFLKIYRAKLSEHLIIIILNPVN 145
           A  N PFL+I+RAK  +  ++ +++P++
Sbjct: 476 AVENSPFLEIFRAKKFD--VLFMVDPID 501


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,727
Number of Sequences: 5004
Number of extensions: 42052
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)