Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_O07
(435 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 29 0.41
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 27 1.2
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 26 2.2
SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce... 26 2.2
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 25 6.7
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 25 6.7
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 25 6.7
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 6.7
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 24 8.8
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|... 24 8.8
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 28.7 bits (61), Expect = 0.41
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -2
Query: 254 PMLQMQRLGPEQSPLGHPPAQRGLHLLSVRSIEYPGLQTH*LPSVQTPLMHGSEH 90
P+L +R+ E + +Q +LL + I+YP LPS LMH H
Sbjct: 181 PVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCH 235
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 1.2
Identities = 11/36 (30%), Positives = 14/36 (38%)
Frame = +1
Query: 88 ECSEPCINGVCTEGNQCVCNPGYSMDLTDRRCKPRC 195
+C E C N C +G C G D C +C
Sbjct: 330 DCGEDCENNPCCDGKTCKLTKGSLCDDQQDACCYQC 365
>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 746
Score = 26.2 bits (55), Expect = 2.2
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +1
Query: 235 LCICNMGYHKDTSVKGRAVCVKRIRRSLNYFLSKK 339
+CICN+ Y KD + + + + +L +++K+
Sbjct: 690 VCICNIVYSKDQEIFNKFIKTPKAVETLRTYITKQ 724
>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 213
Score = 26.2 bits (55), Expect = 2.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 50 EAMLTDKTHNVSLNVLNRASMEFARKAINVSAIPDI 157
E + T H V+L+++N+ E R + +IP I
Sbjct: 70 EELQTGSVHQVALSIINKEQREEERYVFSTDSIPII 105
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 24.6 bits (51), Expect = 6.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 189 GLAPSIGKIHRISGIADTLIAFRANSIDARFRTFRETLCVLSV 61
GL I ISGI L A N++ + +FRE C +++
Sbjct: 31 GLETKYSIISIISGIFIGLTAALLNALASLLNSFREGYCTVNI 73
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 24.6 bits (51), Expect = 6.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 111 WSLHGRQSMCLQSRIFYGSYR*KVQAPLCRWMS 209
W LH ++ L +F G YR + P+C +S
Sbjct: 448 WRLHKLRNDSLIVDLFQGMYRSTLVCPVCNTVS 480
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/26 (38%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Frame = +1
Query: 82 FPECSEPCI-NGVCTEGNQCVCNPGY 156
FP C N +C N C PGY
Sbjct: 364 FPSLCRTCPPNAICPSPNYVECKPGY 389
Score = 24.6 bits (51), Expect = 6.7
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +1
Query: 208 PNGLCSGPNLCICNMGY 258
PN +C PN C GY
Sbjct: 373 PNAICPSPNYVECKPGY 389
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 74 HNVSLNVLNRASMEFARKAINVSAIPDILWILPI 175
HNV + + +++ + A K ++ +I DIL +P+
Sbjct: 984 HNVDVQLTSKSLISLAEKRLDSFSINDILSQVPV 1017
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 24.2 bits (50), Expect = 8.8
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 37 TDRWCGWGLCD 5
T RW G+GLCD
Sbjct: 62 TIRWMGYGLCD 72
>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 24.2 bits (50), Expect = 8.8
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Frame = +2
Query: 77 NVSLNVLNRASM---EFARKAINVSAIPDILWILPI-EGA------SPVVQVDVPMDSVQ 226
N L L+R+ + +K I++ +I I+W LP+ G +P + V +DSV
Sbjct: 104 NSGLRALDRSGKPCRRWEKKPISIRSISTIVWKLPLWIGTPDSIPNTPELPVKTTLDSVN 163
Query: 227 DLIFAFVTWA 256
++ A T A
Sbjct: 164 EIAAALSTHA 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,877,404
Number of Sequences: 5004
Number of extensions: 40513
Number of successful extensions: 115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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