Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_O07
(435 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0193 - 27359575-27361962 29 1.2
01_01_1121 + 8893177-8893199,8893260-8893287,8893656-8893730,889... 29 1.6
05_05_0020 - 21560896-21561352,21563399-21563480,21564143-215642... 29 2.2
02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688 29 2.2
02_05_1157 - 34533625-34533875,34535279-34536340,34536673-345368... 28 2.9
01_06_0678 - 31114259-31114321,31114508-31114552,31114644-311147... 28 2.9
05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111 28 3.8
10_01_0318 + 3493913-3496976,3497064-3497392 27 5.0
04_04_1322 + 32640414-32642327 27 5.0
02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852 27 5.0
11_08_0022 + 27733247-27733935,27735722-27735981,27736213-277364... 27 6.6
10_08_0026 - 14253680-14253894,14253981-14254109,14254704-142547... 27 6.6
04_04_0207 + 23602065-23604315,23604611-23605116 27 6.6
02_03_0193 + 16211395-16212729,16212894-16213401,16213712-16214112 27 8.7
>01_06_0193 - 27359575-27361962
Length = 795
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = +1
Query: 109 NGVC--TEGNQCVCNPGYSM---DLTDRRCKPRCAGGC 207
NG+C + G +C C PGY M + R C+P + C
Sbjct: 291 NGICEYSPGLRCTCPPGYEMTDPENWSRGCRPTFSVSC 328
>01_01_1121 +
8893177-8893199,8893260-8893287,8893656-8893730,
8894748-8894813,8894917-8894959,8895102-8895150,
8895899-8895992,8896078-8896130,8896921-8897005,
8897242-8897344,8897421-8897513,8897985-8898051,
8898309-8898375,8898463-8898516,8898632-8898766
Length = 344
Score = 29.1 bits (62), Expect = 1.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 199 GGCPNGLCSGPNLCICNMGY 258
G CPN C G CIC++ Y
Sbjct: 70 GQCPNKECKGKQGCICSISY 89
>05_05_0020 -
21560896-21561352,21563399-21563480,21564143-21564263,
21564424-21565074,21565206-21565338,21565677-21565728,
21566115-21566244,21567241-21567300,21567444-21567536,
21567795-21567919,21568263-21568353,21568828-21569127,
21569415-21570038
Length = 972
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/79 (22%), Positives = 32/79 (40%)
Frame = +1
Query: 94 SEPCINGVCTEGNQCVCNPGYSMDLTDRRCKPRCAGGCPNGLCSGPNLCICNMGYHKDTS 273
S P +NG + + C YS + + KP+C+ C C G + G D S
Sbjct: 635 SVPAVNGYHSTQERTSCEFRYSGEDVEGAAKPQCS--CGENACEGDHNGSSMRGLDSDDS 692
Query: 274 VKGRAVCVKRIRRSLNYFL 330
+ + ++ R + F+
Sbjct: 693 IGRKHHFRSKLSRKYHSFM 711
>02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688
Length = 761
Score = 28.7 bits (61), Expect = 2.2
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Frame = +1
Query: 103 CINGVCTEGNQCVCNPGYS---------MDLT--DRRCKPRCAGGCPNGLCSGPNLCICN 249
CI+ + G +C C+ GY D+ +R K C G C N L G C+C
Sbjct: 284 CIDSIDGPGYRCNCSQGYEGNPYLDGGCQDINECERPDKYACFGECTNTL--GSYSCMCP 341
Query: 250 MGYHKDTSVKGRAVCVKRIRRSLNYFLSKKLKSII*FVSMYVSSLVIFCL 399
G D S+ C+++ + + L+ K+ + + V +++ L+ FCL
Sbjct: 342 RGARGDPSIP--QGCLEKDK----FTLALKVVTGV-SVGVFLPLLMYFCL 384
>02_05_1157 -
34533625-34533875,34535279-34536340,34536673-34536837,
34536993-34537941
Length = 808
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +1
Query: 100 PCINGVCTE---GNQCVCNPGYSMDLTDRRCKP 189
PC +GVCT G +C C G+S D C+P
Sbjct: 328 PC-HGVCTNLLGGYKCDCPHGFSGDAIKNDCRP 359
>01_06_0678 -
31114259-31114321,31114508-31114552,31114644-31114742,
31114827-31114872,31115026-31115102,31115385-31115432,
31120640-31120708,31120848-31120853,31120955-31121032,
31121246-31121344,31121427-31121489,31122642-31122713,
31122800-31122874,31122965-31123021,31123983-31124186,
31124317-31124394,31124485-31124547,31124646-31125284,
31125367-31125416,31125496-31125576,31125896-31125923
Length = 679
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 1 DHHITPNRTNDLSS-VQGGHVNGQNTQRFPECSEPCINGVCTEGNQCVCNPGYSMDLTDR 177
+ + +R ND+ + V V Q+T+R E + ++G GN + + D
Sbjct: 125 EEKVVVDRKNDIGAEVVDTEVEVQSTERSAEDAAIVVDGAADSGNSEGAAESSAPSVPDE 184
Query: 178 RCKP 189
RC+P
Sbjct: 185 RCEP 188
>05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111
Length = 677
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 55 HVNGQNTQRFPECSEPCINGVC 120
HV+ Q + P+ SEP +NG C
Sbjct: 509 HVDEQGSSNSPDGSEPSVNGFC 530
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 27.5 bits (58), Expect = 5.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 199 GGCPNGLCSGPNLCICNMGYHK 264
G P GLC+G L + ++GY++
Sbjct: 481 GAIPPGLCTGGQLAVLDLGYNQ 502
>04_04_1322 + 32640414-32642327
Length = 637
Score = 27.5 bits (58), Expect = 5.0
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +1
Query: 103 CINGVCT---EGNQCVCNPGYSMDLTDRRCKPRCAGGCPNGLCSGPNLCICNMGYHKDTS 273
CI CT EGN +C G+ +RC G CP + G + C+ + G K S
Sbjct: 386 CIFEGCTKGAEGNTLLCK-GHG---GGKRCLFEGGGVCPKSVHGGTSFCVAH-GGGKRCS 440
Query: 274 VKGRAVCVKRIR 309
V G C K R
Sbjct: 441 VPG---CTKSAR 449
>02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852
Length = 764
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Frame = +1
Query: 112 GVCTE---GNQCVCNPGYSMDLTDRR-CKPR 192
G CT + CVC PG S + TDR C+P+
Sbjct: 330 GDCTNMLGSHTCVCPPGTSGNWTDRNGCRPK 360
>11_08_0022 +
27733247-27733935,27735722-27735981,27736213-27736404,
27737695-27738686
Length = 710
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Frame = +1
Query: 85 PECSEP---CINGVCTEGNQCVCNPGY 156
P C P C+N +G C C+PGY
Sbjct: 277 PACVSPNSYCVNTTNGQGYLCKCSPGY 303
>10_08_0026 -
14253680-14253894,14253981-14254109,14254704-14254769,
14254887-14255133
Length = 218
Score = 27.1 bits (57), Expect = 6.6
Identities = 21/67 (31%), Positives = 28/67 (41%)
Frame = +1
Query: 82 FPECSEPCINGVCTEGNQCVCNPGYSMDLTDRRCKPRCAGGCPNGLCSGPNLCICNMGYH 261
FP ++PC+ C G +CV G S C C+ G N CI N +
Sbjct: 100 FP-LTDPCVAINCGSGGECVKEEGLSY-----HC--ACSPGFVNMFNLTMFPCIKNCAFG 151
Query: 262 KDTSVKG 282
KD S +G
Sbjct: 152 KDCSAQG 158
>04_04_0207 + 23602065-23604315,23604611-23605116
Length = 918
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 190 RCAGGCPNGLCSGPNLCICNMGYHKDTSVKGRAVCVKRIRRSLNYFLS 333
R AGG P+ LC P + I N+ ++ G + R RR ++ LS
Sbjct: 386 RLAGGLPDTLCDSPAMSIINV---SGNALSGAIPELTRCRRLVSLSLS 430
>02_03_0193 + 16211395-16212729,16212894-16213401,16213712-16214112
Length = 747
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 94 SEPCINGVCTEGNQCVCNPGYSMDLTDRRCKPRCAGGCPNGLC 222
SEP I G+ + + + + G S D+ +R P GGC G C
Sbjct: 10 SEPTIRGIPGQETRWMTHGG-SSDV--QRLDPSIGGGCTGGAC 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,469,191
Number of Sequences: 37544
Number of extensions: 285473
Number of successful extensions: 802
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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