Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_O07
         (435 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    26   0.16 
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    26   0.16 
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    26   0.21 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   0.85 
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   6.0  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   6.0  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 26.2 bits (55), Expect = 0.16
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
 Frame = +1

Query: 178 RCKPRCAGGCPN----GLC---SGPNLCICNMGYHKDTSVKGRAVCVKR 303
           RC  RC   CPN     LC     P  C+C +GY ++     + VCV R
Sbjct: 45  RCDGRCQRFCPNVVPKPLCIKICAPG-CVCRLGYLRNK----KKVCVPR 88


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 26.2 bits (55), Expect = 0.16
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
 Frame = +1

Query: 178 RCKPRCAGGCPN----GLC---SGPNLCICNMGYHKDTSVKGRAVCVKR 303
           RC  RC   CPN     LC     P  C+C +GY ++     + VCV R
Sbjct: 45  RCDGRCQRFCPNVVPKPLCIKICAPG-CVCRLGYLRNK----KKVCVPR 88


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 25.8 bits (54), Expect = 0.21
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 112 GVCTEGNQCVCN 147
           G+C EG QC CN
Sbjct: 77  GICAEGMQCSCN 88


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 136 CVCNPGYSMDLTDRRC 183
           C C PGY  D+  + C
Sbjct: 247 CHCKPGYQADVEKQEC 262


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/29 (24%), Positives = 14/29 (48%)
 Frame = -3

Query: 286 PDLSHSCLYGSPCYKCKD*VLNRVHWDIH 200
           P ++ +  +   CY C++  L   H  +H
Sbjct: 79  PSVASTTGFSKECYCCRESYLKERHITLH 107


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/29 (24%), Positives = 14/29 (48%)
 Frame = -3

Query: 286 PDLSHSCLYGSPCYKCKD*VLNRVHWDIH 200
           P ++ +  +   CY C++  L   H  +H
Sbjct: 79  PSVASTTGFSKECYCCRESYLKERHITLH 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,453
Number of Sequences: 438
Number of extensions: 2582
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)