Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_O06
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    26   3.3  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   7.6  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   7.6  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   7.6  

>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 120 PEKGLSLFQDVDQVNVDDEYYKIGKDYDVEANID 221
           P K L + +      +   YYK+ K Y  +AN D
Sbjct: 87  PYKTLGVSKSASASEIKSAYYKLAKQYHPDANPD 120


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 117 APEKGLSLFQDVDQVNVDDEYYKIGKDYDVEANID 221
           +P+      Q+V Q+N +DEY +   + D EA ID
Sbjct: 46  SPDLNFFSTQNVMQMNFEDEYSEFSNE-DDEAEID 79


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 413 NEGQFL-YAYYIAVIQRNDTHG 475
           N G FL YA++  VI+  D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 267 LYNFKNSSTAFLLVSXRCWLQRHSP 193
           +Y+    S    L   R WLQRHSP
Sbjct: 80  VYDLYRDSPKIWLRRERQWLQRHSP 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,188,293
Number of Sequences: 5004
Number of extensions: 41484
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)