Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_O05
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    29   0.20 
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    27   0.82 
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   2.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   4.4  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   5.8  
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    24   7.7  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    24   7.7  

>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 29.5 bits (63), Expect = 0.20
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 377 VTALFGSPQLRVCEKVSSGLTVQVPTILSP*RASRRMPAILSSGVLPL 234
           +  +FG   LR+  ++S GL + +P +L P R + + P       +PL
Sbjct: 239 LVCIFGEHHLRIVWRLSIGLGLVIPCVLLPFRIAMKDPKTYVKHKVPL 286


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 27.5 bits (58), Expect = 0.82
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 97  PTGAPPSACFDMIPGHAADVQTVPAPYT--ITTAVSSVKAGHSIDVVISGKTP 249
           P     S  F+ IP    +V+++   Y+  + T +S +KA   +  ++ GK P
Sbjct: 257 PANYITSTAFESIPESGHNVRSLEITYSGSLLTNISLIKADDLVGALVDGKLP 309


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = -3

Query: 267  AGHFVFGCFAADNHVNGMTSFYRAD---SCSDGVRRWYCLNISSV 142
            AG   FG    D  +   TSF   D   +CSD  + W C +  S+
Sbjct: 1104 AGGIRFGEMERDAVIGHGTSFLMQDRLMNCSDYAQSWVCRDCGSI 1148


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 380  WVTALFGSPQLRVCEKVSSGLT 315
            W TA+FGSP   +      GLT
Sbjct: 1134 WFTAVFGSPSKAIVGLARKGLT 1155


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 163 VPAPYTITTAVSSVKAGHSIDVVISG 240
           VP+P+  +TA SS +  +S+D+  SG
Sbjct: 184 VPSPFGASTASSSSRRVYSVDLRDSG 209


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 282 SFQEDAGHFVFGCFAADNHVNGMTSF 205
           +F+E+ GH   G      HV GM S+
Sbjct: 27  TFEENRGHSFEGVTLQRRHVKGMKSY 52


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 14/61 (22%), Positives = 23/61 (37%)
 Frame = -3

Query: 354 TVEGLREGIIGAYGPSADDLVTLTSFQEDAGHFVFGCFAADNHVNGMTSFYRADSCSDGV 175
           T E L+  ++ AYG +  +    +SF    GH          +V  +  F       DG 
Sbjct: 174 TAEQLKREVVSAYGATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFVSKHIVPDGA 233

Query: 174 R 172
           +
Sbjct: 234 K 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,786,876
Number of Sequences: 5004
Number of extensions: 36073
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)