Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_O05
(401 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0934 - 26073084-26073220,26073296-26073345,26073465-260736... 29 1.8
05_05_0287 + 23868503-23869045 29 1.8
04_03_0118 - 11474060-11475298 28 2.4
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 28 3.2
10_03_0046 + 7357777-7357992 27 4.2
07_03_0730 + 21030123-21030338 27 4.2
03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269 27 4.2
01_06_1064 + 34237919-34238155 27 4.2
06_03_1220 - 28505306-28508497 27 5.6
02_02_0726 - 13374061-13374151,13374576-13374787,13374990-133750... 27 5.6
02_01_0729 - 5465521-5466005,5466481-5466793,5466878-5467094,546... 27 7.3
01_06_1527 - 38006174-38006815,38006920-38007420 27 7.3
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 26 9.7
10_07_0059 + 12475452-12475785,12475889-12476523 26 9.7
09_02_0420 + 9051728-9051754,9053244-9053530,9055263-9055500,905... 26 9.7
08_02_0350 + 16123139-16124041 26 9.7
08_01_0076 - 540886-541527,542173-542754 26 9.7
04_04_1090 - 30764340-30764704,30765092-30765204,30765414-307656... 26 9.7
>06_03_0934 -
26073084-26073220,26073296-26073345,26073465-26073634,
26073651-26073803,26073877-26074032,26074227-26074350,
26075066-26075178,26076336-26076469,26077391-26077578,
26077718-26078139
Length = 548
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/55 (23%), Positives = 24/55 (43%)
Frame = -3
Query: 231 NHVNGMTSFYRADSCSDGVRRWYCLNISSVAWDHVEARARRCSGGVSAGKRHHRC 67
+++ +SFY A S + C ++ AWD ++ R +G + K C
Sbjct: 231 DYITPWSSFYEAVSQDYKSESFNCFSVIKAAWDLIDERGSTDAGLLQLSKTFRAC 285
>05_05_0287 + 23868503-23869045
Length = 180
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = -3
Query: 249 GCFAADNHVNGMTSFYRADSCSDGVRRWYCLNISSVAWDHVEARARRC 106
G +D G+ S Y A + G VAWD V RARRC
Sbjct: 32 GGLVSDLDAAGVASSYYAPFAAAGAGAAIAAVAGVVAWDAVGHRARRC 79
>04_03_0118 - 11474060-11475298
Length = 412
Score = 28.3 bits (60), Expect = 2.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 337 RRYHRGLRSKCRRSCHPDE 281
R+YH R C SC+PDE
Sbjct: 304 RKYHAIFRKHCTPSCYPDE 322
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -1
Query: 332 VSSGLTVQVPTILSP*RASRRMPAILSSGVLPL 234
VSS + +P + SP +ASRR+ A+ S LPL
Sbjct: 19 VSSQPPLHLPRLRSPHQASRRLSALPFSRALPL 51
>10_03_0046 + 7357777-7357992
Length = 71
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 195 DSCSDGVRRWYCLNISSVAWDHVEARARRCSGGVSAG 85
D DG+RRW+C S + + V R GG G
Sbjct: 23 DGGGDGLRRWWCRPASGRSTERVSGREVGGFGGGEGG 59
>07_03_0730 + 21030123-21030338
Length = 71
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 195 DSCSDGVRRWYCLNISSVAWDHVEARARRCSGGVSAG 85
D DG+RRW+C S + + V R GG G
Sbjct: 23 DGGGDGLRRWWCRPASGRSTERVSGREVGGFGGGEGG 59
>03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269
Length = 309
Score = 27.5 bits (58), Expect = 4.2
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -3
Query: 375 HGVIWFTTVEGLREGIIGAYGPSADDL-VTLTSFQE--DAGHFVFG 247
H +W +E + E +G G ADD+ L S E D+G+ FG
Sbjct: 142 HAALWVKEIEKMEEARLGGGGGGADDIDRLLDSCSEIFDSGNTDFG 187
>01_06_1064 + 34237919-34238155
Length = 78
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 195 DSCSDGVRRWYCLNISSVAWDHVEARARRCSGGVSAG 85
D DG+RRW+C S + + V R GG G
Sbjct: 23 DGGGDGLRRWWCRPASGRSTERVSGREVGGFGGGEGG 59
>06_03_1220 - 28505306-28508497
Length = 1063
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 280 ARQGDKIVGTWTVSPDDTFSQTLNCG 357
+R GD IVG W SPD + CG
Sbjct: 43 SRAGDGIVGEWQRSPDCCTWDGVGCG 68
>02_02_0726 -
13374061-13374151,13374576-13374787,13374990-13375002,
13375318-13375655
Length = 217
Score = 27.1 bits (57), Expect = 5.6
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3
Query: 96 VSAGKRHHRCNCYYVSEHHL 37
+S K+H +C+ ++VSE H+
Sbjct: 39 ISNAKKHEQCDLFHVSESHI 58
>02_01_0729 -
5465521-5466005,5466481-5466793,5466878-5467094,
5467797-5468116
Length = 444
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 136 PGHAADVQTVPAPY-TITTAVSSVKAGHSIDVVISGK 243
P AADV VP P ++ T+V++V AGH + +S +
Sbjct: 50 PAPAADVY-VPTPVPSLPTSVAAVAAGHYHSLAVSAE 85
>01_06_1527 - 38006174-38006815,38006920-38007420
Length = 380
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 334 RYHRGLRSKCRRSCHPDE 281
RY+ R CR SC+PDE
Sbjct: 273 RYYPLFRRHCRPSCYPDE 290
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = -3
Query: 219 GMTSFYRADSCSDGVRRWYCLNISSVAWDHVEARARRCSGGVSAGKRHHRC 67
G ++ S + R W L S W ++ RA RC V A RC
Sbjct: 74 GRLNYRDRASMAAACRTWRDLGASPCLWSALDLRAHRCDAEV-ASSLSSRC 123
>10_07_0059 + 12475452-12475785,12475889-12476523
Length = 322
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 15 DLPEIYRKDDVHLRSSSCIGGGAYQRL 95
D PE++ DVH +S GGAY+ L
Sbjct: 260 DDPEVFDPYDVHGGLASYFAGGAYESL 286
>09_02_0420 +
9051728-9051754,9053244-9053530,9055263-9055500,
9057010-9057204,9058075-9058339,9058520-9058827
Length = 439
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 234 QRQNTRRQNGRHPPGSS-SG*QDRRHLDR 317
+R+ T GR PPGSS SG + R+H R
Sbjct: 316 RRRATGHPKGRQPPGSSGSGARARQHRRR 344
>08_02_0350 + 16123139-16124041
Length = 300
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +1
Query: 100 TGAPPSACFDMIPGHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTPED 255
+G P FD + AA+V+ VP P + ++SS+ ++ V+ P+D
Sbjct: 107 SGEPAGFFFDELDALAAEVEVVPLPSRM--SLSSIGGLAAVAGVVLPSLPDD 156
>08_01_0076 - 540886-541527,542173-542754
Length = 407
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 334 RYHRGLRSKCRRSCHPDE 281
+Y+ R CR SC+PDE
Sbjct: 300 KYYSIFRKHCRPSCYPDE 317
>04_04_1090 -
30764340-30764704,30765092-30765204,30765414-30765638,
30766432-30766553,30766617-30767174,30769207-30769477,
30772175-30773256
Length = 911
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 289 GDKIVGTWTVSPDDTFSQTLNCG 357
GDK + TWT + T S NCG
Sbjct: 192 GDKSLNTWTFAVFTTVSTFSNCG 214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,431,491
Number of Sequences: 37544
Number of extensions: 310031
Number of successful extensions: 911
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -