Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_O04
         (489 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   5.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   5.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.0  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   9.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.3  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 261 IIPYT*RYYAFTYIFNTI 314
           ++P   +Y  FT+I NT+
Sbjct: 292 VLPLIAKYLLFTFIMNTV 309


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +2

Query: 419 NVSDSCRELYYSETNL 466
           N +++C++LYY+  N+
Sbjct: 346 NYNNNCKKLYYNIINI 361


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 364 KHIPLSSSVIFNL 402
           KH+P+ +SV+F +
Sbjct: 199 KHLPIGASVLFEI 211


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 155 YFCLILFRIPDVKYNVYVN*ESDQSSRKRYVNMRNR 48
           Y C+ L     V +  Y    +D S   + VNM N+
Sbjct: 407 YDCVTLLFSGIVGFGAYCAAHTDSSGAMKIVNMLNQ 442


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 312 IKQNEEILNDKN*ILKVKTYSFIFICNFQFRRLQNKTF 425
           I + EEI N    I K+K +  + + N +    ++K +
Sbjct: 162 IFEREEIKNVLTKINKIKEHDTVLVVNIEKSENESKKY 199


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 155 YFCLILFRIPDVKYNVYVN*ESDQSSRKRYVNMRNR 48
           Y C+ L     V +  Y    +D S   + VNM N+
Sbjct: 407 YDCVTLLFSGIVGFGAYCAAHTDSSGAVKIVNMLNQ 442


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,394
Number of Sequences: 438
Number of extensions: 2341
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)