Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_O03
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.8  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   4.1  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   5.4  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.2  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    25   7.2  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   9.5  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    25   9.5  

>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 126 SAVSSQXXXXXXXXXXXXPCTMNPSARTVRSSSRHSWRPSGGTSEDSSRLS 278
           S+ SS             P T + S+ +  SSS  S + S  +S+ SSR S
Sbjct: 123 SSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSS 173


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 10  RVFLSAPKKRKSFVIKKHSC 69
           RVFL A ++R  F++  HSC
Sbjct: 733 RVFLVANRERHPFLVNLHSC 752


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/22 (40%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +2

Query: 263 LVKVKL-VPYGKSTHDKVNEKW 325
           L++++L + Y  S +D++NEKW
Sbjct: 776 LIRIELDIKYATSFYDELNEKW 797


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/77 (19%), Positives = 30/77 (38%)
 Frame = +3

Query: 126 SAVSSQXXXXXXXXXXXXPCTMNPSARTVRSSSRHSWRPSGGTSEDSSRLSWCLMERARM 305
           S VSS               +  P++ +  SSS  S + S  +   S+ +S      +  
Sbjct: 370 STVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTS 429

Query: 306 TR*MKSGLSRAITDLTN 356
           +R      S +++ L++
Sbjct: 430 SRSSSHSSSHSLSSLSS 446


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 380 CILKDRSLQDTEKMELVICLMSQASPDKSLDTCLIQVNKQNE 505
           CI+K  +L+ +E + L++C  S    +  LD  L++V + +E
Sbjct: 23  CIVKFTNLRSSEDVNLLLCYAS-IHGEMYLDYVLVRVTEFDE 63


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 212 KKFITTQLAPVWRDFRGLVKVKLVPY 289
           K+ ITT +  VW  FR L+  + VPY
Sbjct: 183 KESITTAVRWVWHAFRILLITRGVPY 208


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
 Frame = +2

Query: 323 WTFTCHHGPDE---CYGNKMQACILKDRSLQDTEKMELV 430
           W  TC   P       G     C++ D S+ D + +ELV
Sbjct: 65  WIMTCAFSPSTKSIAAGGLNNFCVVYDTSVPDADPVELV 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,528
Number of Sequences: 5004
Number of extensions: 40442
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)