Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_O02
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.54 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.54 
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   2.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.2  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   5.0  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   5.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
 Frame = +1

Query: 91  WPH*LGVLCALFSKSCKP-YHCVCW 162
           W H LG LC L S  C P Y    W
Sbjct: 527 WSHVLGWLCGLSSMLCIPGYMIYIW 551


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
 Frame = +1

Query: 91  WPH*LGVLCALFSKSCKP-YHCVCW 162
           W H LG LC L S  C P Y    W
Sbjct: 580 WSHVLGWLCGLSSMLCIPGYMIYIW 604


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 443 YNNPFLNRLVPNSARGKYYKINH 375
           YNN    +L  N+ R  YY IN+
Sbjct: 91  YNNNNYKKLYCNNYRKLYYNINY 113


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 400 EENIIRLIIISPSFKIAYLYETFTSHHGREG 308
           EE   + ++   +F    LY++    HG+EG
Sbjct: 58  EEKTYQCLLCQKAFDQKNLYQSHLRSHGKEG 88


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 443 YNNPFLNRLVPNSARGKYYKINH 375
           YNN    +L  N+ +  YY IN+
Sbjct: 91  YNNNNYKKLYCNNYKKLYYNINY 113


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 443 YNNPFLNRLVPNSARGKYYKINH 375
           YNN    +L  N+ +  YY IN+
Sbjct: 91  YNNNNYKKLYCNNYKKLYYNINY 113


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 122 FSPNHANPIIVSAGWDRTVK 181
           F     NPI V   WD+ V+
Sbjct: 323 FDRMQGNPICVQIPWDKNVE 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,462
Number of Sequences: 438
Number of extensions: 3477
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)