Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_O01
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    31   0.19 
SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    27   2.3  
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    26   4.1  
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc...    26   5.4  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   5.4  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    26   5.4  
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    25   7.2  
SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyce...    25   9.5  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    25   9.5  

>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 473 GTTVSAVCSEFAYSNTGPSCHHFSSKQCFGNATWELQTDYSTCSITP 613
           GT +  + +  +Y N   +C++ S   C   A   +Q+  +T SITP
Sbjct: 806 GTVLCPIVNGVSYQNCNGACYNPSQYGCDNGALGPVQSSSTTSSITP 852


>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 137 NLCQQPSGILARGISHSGNYNPLVYLVTLYQAAPHIYKRY 18
           N+    SG+++ G + +   NP   L T  Q  PHIYK +
Sbjct: 210 NIVNVMSGLIS-GATATAITNPFDMLKTRVQLEPHIYKNF 248


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 414 SVALTFAGI*WLQHSLAA*KHLSHRPCAAGIIASRTALATSSKPGSKG 271
           ++ ++FAG+ W      +  HLS     A + A R  + TS+  G  G
Sbjct: 245 AMLMSFAGVIWTMSGYDSPFHLSEECSNASVAAPRAIVMTSAFGGIVG 292


>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 191 LSAGCFYGNLFAPCLEIPKPDGTCGCYPFDP 283
           L  GC  GNL  P LE+ +P+    C  F P
Sbjct: 60  LEVGCGVGNLVYPLLEV-QPNLKIYCCDFSP 89


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 152 GCTKDNLCQQPSGILARGISHSGNYNPLVYLV 57
           GCT DN C Q   ++A  +  + N  P   LV
Sbjct: 428 GCTYDNTCSQRGSVIA-NVYFAKNKQPATKLV 458


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
 Frame = +2

Query: 344 WERCFYAARECCSHYMPA---NVSATDPNQCETTFDGWTCWQ 460
           W++C Y  RE C    P     V+  DP    T  D  + +Q
Sbjct: 61  WKKCTYGIREYCKFIGPGFLIAVAYIDPGNYSTDLDAGSRFQ 102


>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = +3

Query: 495 VLSSPIPIQDLRAIISAVNN 554
           +LS P+P++  RAI++A++N
Sbjct: 21  ILSLPLPLKVRRAILNAISN 40


>SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 176

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = +2

Query: 41  PLDIVSPDIPKDCNYRNVRFHEQVFRW---VAGRGCLLYTPNF 160
           P D++     ++   RN RFH+++  W   V G   L  TP F
Sbjct: 97  PRDVMQEAAAQELTNRNWRFHKELRVWLTPVPGMKPLQRTPQF 139


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -1

Query: 414 SVALTFAGI*WLQHSLAA*KHLSHRPCAAGIIASRTALATSSKPGSKG 271
           ++ ++F G+ W      A  H+S     A + A R  + T++  G  G
Sbjct: 262 AILMSFCGVIWTMSGYDAPFHMSEETANASVNAPRGIILTAAIGGIMG 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,395
Number of Sequences: 5004
Number of extensions: 67246
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)