Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_O01
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 33 0.20
03_05_0884 - 28487013-28487271,28487355-28487516,28487594-284878... 30 1.4
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 5.6
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 28 7.4
07_03_1174 + 24538522-24538682,24539229-24539430,24539529-245396... 27 9.8
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 27 9.8
01_05_0418 + 21964094-21964482,21964558-21964681 27 9.8
>12_01_0830 -
7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +2
Query: 119 WVAGRGCLLYTPNFLYVDGVNTINLSAGCFYGNLFAPCLEI 241
+VAG+G +++ P F ++ V T + +A +G F+PC++I
Sbjct: 359 FVAGKGNVVHRPTFSHISSVTT-SSNASSEHGATFSPCVDI 398
>03_05_0884 - 28487013-28487271,28487355-28487516,28487594-28487802,
28488490-28488630,28488876-28489071,28489207-28489379,
28490095-28490142,28490301-28490378,28490526-28490792,
28491689-28491842,28491928-28492064,28492459-28492536,
28493039-28493216,28493589-28493803,28494063-28494422,
28494497-28494973,28495561-28495665,28495838-28496020,
28496105-28496263,28496937-28497154,28497737-28497905,
28498262-28498568,28498699-28498826,28498902-28499060,
28499194-28499364,28500258-28500376,28500604-28500853,
28501007-28501759
Length = 1950
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/100 (24%), Positives = 36/100 (36%)
Frame = +2
Query: 77 CNYRNVRFHEQVFRWVAGRGCLLYTPNFLYVDGVNTINLSAGCFYGNLFAPCLEIPKPDG 256
CN ++V+R A G Y P + + A ++F CL+ +P G
Sbjct: 1245 CNMGLQLLEDRVYR--AALGWFAYAPEWYESQNKSFAQREAQSV--SIFVHCLQNERPSG 1300
Query: 257 TCGCYPFDPGLEEVANAVRDAIIPAAHGRWERCFYAAREC 376
+ P G E N R ++ G W R Y C
Sbjct: 1301 SADSAPKSQGREGEPNMYRPLVMTVI-GMWMRSKYVVAWC 1339
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = -3
Query: 571 CCIAKTLFTAEMMARRSCIGIGELRTYS-GHRCARICFLPTCPAIKRCFALIGV-CSTN 401
C L + RSC G + + H C+ IC CP++ +C + V C+ N
Sbjct: 624 CMYYNNLNATKQQKVRSCGGPCHRKLPNCPHLCSEICHPGQCPSVDQCMKKVNVRCACN 682
>02_01_0084 -
573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 94 EIPRASIPLGCWQRLSFVHPELSL 165
E R +P+G WQR + VH +S+
Sbjct: 162 ERARKILPMGMWQRATLVHQHISI 185
>07_03_1174 +
24538522-24538682,24539229-24539430,24539529-24539675,
24539832-24539944,24540580-24540791,24541194-24541258,
24541581-24541751,24542543-24542887,24542980-24543173,
24543292-24543448,24543946-24544010,24544166-24544331
Length = 665
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 107 QVFRWVAGRGCLLYTPNFL-YVDGVNTINLSAGCF 208
+V+ W A G ++TP FL Y+ G ++ CF
Sbjct: 447 KVYVWYASFGSNMWTPRFLCYIQGGKAEGMNIPCF 481
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 83 YRNVRFHEQVFRWVAGRGCLLYTPNFLYVDGVNTINL 193
Y N+ E+ + WVA R + TP+F + N+ NL
Sbjct: 1542 YHNISESERTYVWVANRDNPITTPSFATLAISNSSNL 1578
>01_05_0418 + 21964094-21964482,21964558-21964681
Length = 170
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 332 AHGRWERCFYAARECCSHYMPANVSA 409
A GRW+ C + A + + PA+ SA
Sbjct: 2 AAGRWDGCVWTASAAAARWQPASYSA 27
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,804,219
Number of Sequences: 37544
Number of extensions: 464452
Number of successful extensions: 1112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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