Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_N24
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 31 0.11
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 4.3
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 26 4.3
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 5.7
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 5.7
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 25 10.0
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 25 10.0
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 25 10.0
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 25 10.0
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 25 10.0
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 31.1 bits (67), Expect = 0.11
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 46 QRSGSVRTILTMIGSTSLDSFTISERLWPSTRSRNGAWSVTH 171
Q S T + S + S T+S WP+T +GAWS T+
Sbjct: 40 QNSERFSTASRSVKSGLISSSTVSAWTWPATLLSSGAWSYTY 81
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 4.3
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -2
Query: 131 GHNLSEIVNESNEVEPIIVRMVLTDPLRCLESVHNVRQVS 12
G++LSE +N N + + ++ DP+R +H + S
Sbjct: 936 GNHLSEKLNSDNHIPKALQKLDSADPIRKPSLLHTSKSYS 975
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 25.8 bits (54), Expect = 4.3
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -2
Query: 155 APLRLLVEGHNLSEIVNESNEVEPIIVRMVLTDPLRCL--ESVHNV 24
A LR V S ++NE+NE + I+ ++L+ LR L E+ N+
Sbjct: 666 ARLRRSVSNKEDSSLINEANEEKEIVTNLLLS-ALRALISENAENI 710
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 456 DEEIKKAVLEFNQYDLYTKERRDPGHRSSLAL 551
+E +K +E ++ DLYT R P +L L
Sbjct: 24 EEFVKDGTVEVSRRDLYTMTDRSPAEHGALDL 55
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.4 bits (53), Expect = 5.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 426 GDYQHLLKEGDEEIKKAVLEFN 491
G+Y+HL + E+K+ + EFN
Sbjct: 786 GNYEHLFVSTNSELKQQLSEFN 807
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 24.6 bits (51), Expect = 10.0
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 459 RRLLLEGVGNHHQRATGRTNEILSCKD 379
+RL++EG ++ + G N+ L+C+D
Sbjct: 555 QRLIIEGKYTYYIKRQGTQNKQLNCRD 581
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 24.6 bits (51), Expect = 10.0
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 465 IKKAVLEFNQYDLYTKERRDP 527
+KK + F YD Y E DP
Sbjct: 118 VKKILANFKDYDFYIGESMDP 138
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 24.6 bits (51), Expect = 10.0
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +3
Query: 15 NLPNIVHAFQTAERIR-EDHPDDDW 86
N N HAFQTAE + D D DW
Sbjct: 262 NSHNHDHAFQTAEAVGVADSIDPDW 286
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 213 DDSFKDNPDTYNPKYNTEYGMYEPNCGLENLMVSWGHDEYLYRVLV 350
DD F D+P + NT G+ ++ +W E Y+V++
Sbjct: 106 DDMFADSPSPSVKRQNTGKGISTLTRSFADMQDNWDDIEGYYKVVL 151
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 24.6 bits (51), Expect = 10.0
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +3
Query: 225 KDNPDTYNPKYNTEYGMYEPNCGLENLMVSWGHDEYLYRVLVHNKSKF 368
K N N KYN + C L+N S DEY+Y LV N +F
Sbjct: 108 KKNDTKCNWKYNPDLDY----CYLDN---STSPDEYVYVSLVQNPERF 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,205
Number of Sequences: 5004
Number of extensions: 50505
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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