Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_N24
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0471 + 21130839-21130869,21131013-21131127,21132228-211323... 211 2e-55
03_06_0460 - 34098115-34098622,34098981-34099355,34100939-341011... 31 0.47
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767... 31 0.62
01_03_0094 - 12470441-12471015,12471492-12471738,12472467-12473285 30 1.4
01_03_0091 + 12358475-12359293,12360022-12360268,12360745-12361319 30 1.4
11_01_0788 + 6599962-6602700 29 1.9
01_06_1183 - 35176780-35177266,35179631-35181093 29 1.9
05_03_0169 - 9123684-9124823,9125408-9125594,9126379-9126476,912... 29 3.3
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498... 29 3.3
02_05_1064 - 33842970-33843344,33843596-33843641,33844124-338441... 29 3.3
11_06_0437 - 23533218-23536382 28 4.4
09_04_0144 + 15071723-15071993,15072078-15072632,15072671-150726... 28 5.8
12_02_0185 + 15050613-15051320,15055443-15055742 27 7.7
12_01_0335 - 2583476-2583493,2583919-2583965,2584151-2584274,258... 27 7.7
05_03_0168 - 9116648-9117775,9118699-9118885,9119724-9119821,911... 27 7.7
>06_03_0471 +
21130839-21130869,21131013-21131127,21132228-21132309,
21132444-21132648,21133237-21133296,21133420-21133472,
21133589-21133711,21133844-21133913,21134012-21134090,
21134172-21134253,21134272-21134310
Length = 312
Score = 211 bits (516), Expect = 2e-55
Identities = 94/173 (54%), Positives = 122/173 (70%), Gaps = 3/173 (1%)
Frame = +3
Query: 3 DPDTNLPNIVHAFQTAERIREDHPDDDWFHLIGLIHDLGKVM---AFYEEPQWCVVGDTF 173
DPD ++P I H QTAE IR+D PD+DW HL GLIHDLGKV+ +F E PQW VVGDTF
Sbjct: 109 DPDLDMPQIEHLLQTAEAIRKDFPDEDWLHLTGLIHDLGKVLLHPSFGELPQWSVVGDTF 168
Query: 174 AVGCKWGKSIVYGDDSFKDNPDTYNPKYNTEYGMYEPNCGLENLMVSWGHDEYLYRVLVH 353
VGC + + V+ FK+NPD NPK NT++G Y CGL+N+++SWGHD+Y+Y V
Sbjct: 169 PVGCAFDECNVHFK-YFKENPDYLNPKLNTKFGAYSEGCGLDNVLMSWGHDDYMYLVAKE 227
Query: 354 NKSKFPKKGLYMIRFHSFYPWHAGGDYQHLLKEGDEEIKKAVLEFNQYDLYTK 512
NK+ P GL++IR+HSFYP H G Y HL+ + D+E K + FN+YDLY+K
Sbjct: 228 NKTTLPSAGLFIIRYHSFYPLHKHGAYMHLMNDEDKENLKWLRVFNKYDLYSK 280
>03_06_0460 -
34098115-34098622,34098981-34099355,34100939-34101156,
34101235-34101297
Length = 387
Score = 31.5 bits (68), Expect = 0.47
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +3
Query: 324 DEYLYRVLVHNKSKFPKKGLYMIRFHSFYPWHAGGDYQHLLKEGDEEIKKAVLEFNQYDL 503
D+ L R NK KG ++ F+S Y W GD +L+ DE++ K ++E +
Sbjct: 180 DDRLIRGAPMNKHSSFWKGADVLVFNS-YLWWMTGDKIQILRGADEDMSKDIVEMEAAEA 238
Query: 504 Y 506
Y
Sbjct: 239 Y 239
>01_01_0972 +
7672048-7672390,7672546-7672709,7672864-7672961,
7673040-7673361,7674021-7675220
Length = 708
Score = 31.1 bits (67), Expect = 0.62
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 88 STSLDSFTISERLWPSTRSRNGAWSVTHSPSDVNGVN 198
S L S + S +WP+ +++ G W SP+ G+N
Sbjct: 270 SMLLGSISSSGFIWPALQAKQGEWYTDPSPTSFKGIN 306
>01_03_0094 - 12470441-12471015,12471492-12471738,12472467-12473285
Length = 546
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 429 HHQRATGRTNE-ILSCKDLFWGTLICCAP 346
HHQRA G + +L C DL +G L C P
Sbjct: 199 HHQRAMGGCHGGVLCCADLPYGFLTSCVP 227
>01_03_0091 + 12358475-12359293,12360022-12360268,12360745-12361319
Length = 546
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 429 HHQRATGRTNE-ILSCKDLFWGTLICCAP 346
HHQRA G + +L C DL +G L C P
Sbjct: 199 HHQRAMGGCHGGVLCCADLPYGFLTSCVP 227
>11_01_0788 + 6599962-6602700
Length = 912
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -3
Query: 364 FDLLCTKTLYR--YSSCPQDTIKFS 296
FDL C KT Y +S CPQD K +
Sbjct: 340 FDLFCKKTFYNSMHSKCPQDLEKLA 364
>01_06_1183 - 35176780-35177266,35179631-35181093
Length = 649
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 116 EIVNESNEVEPIIVRMVLTDPLRCLESVHNVRQ 18
EIV E +E I+V + + DP C E + ++ Q
Sbjct: 188 EIVPERERLEEILVEVGINDPASCSEEIESLEQ 220
>05_03_0169 -
9123684-9124823,9125408-9125594,9126379-9126476,
9127124-9127182,9128748-9129081
Length = 605
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 124 LWPSTRSRNGAWSVTHSPSDVNGVN 198
L+P +++G W T SPS+++G+N
Sbjct: 199 LYPYLETKHGEWYQTDSPSNLDGLN 223
>04_04_0468 - 25447774-25447945,25449016-25449130,25449541-25449877,
25450299-25450628,25451090-25451362,25451471-25451929,
25452307-25452516,25452617-25452828,25453304-25453404,
25453584-25454008,25454167-25454360,25454436-25454701,
25454809-25455015,25455121-25455281,25455741-25455933,
25456158-25456251,25457238-25457373,25458074-25458202,
25458315-25458449,25458549-25458613,25459875-25459950,
25460775-25460885,25461194-25461371,25462340-25462434
Length = 1557
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 363 KFPKKGLYMIRF-HSFYPWHAGGDYQHLLKEGDEEIKKAVLEF 488
KF KGL + F H + H+GG YQ L GD ++ + +
Sbjct: 1124 KFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSY 1166
>02_05_1064 -
33842970-33843344,33843596-33843641,33844124-33844176,
33844255-33844512,33845245-33845430,33845862-33845903,
33846598-33846741
Length = 367
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 393 RFHSFYPWHAGGDYQHLLKEGDEEIKKAVLEFN 491
RFH F+ H G + ++ +EE+KK ++ N
Sbjct: 191 RFHIFWVRHMMGQKESMMDHDNEELKKGCVDHN 223
>11_06_0437 - 23533218-23536382
Length = 1054
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 72 PDDDWF-HLIGLIHDLGKVMAFYEEPQWCVVGD 167
PD F H+ IHDL + +AF+ Q C VGD
Sbjct: 505 PDGSHFDHIRCKIHDLLRQLAFHLSRQECFVGD 537
>09_04_0144 +
15071723-15071993,15072078-15072632,15072671-15072681,
15072954-15073012,15073962-15074040
Length = 324
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 411 PWHAGGDYQHLLKEGDEEIKKAVLEFNQYDLYTKERRDPGHRSSLALL 554
PWH G + K GD+E + L F + K +R P ++ + LL
Sbjct: 236 PWHDGIKCKEFRKLGDDEKGEEDLMFKKLAGKKKWQRCPNYKMQIVLL 283
>12_02_0185 + 15050613-15051320,15055443-15055742
Length = 335
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1
Query: 456 RLLLEGVGNHHQRAT 412
RLLL G GNHHQ+A+
Sbjct: 77 RLLLVGSGNHHQQAS 91
>12_01_0335 -
2583476-2583493,2583919-2583965,2584151-2584274,
2584421-2584665,2585281-2585404,2585424-2585456
Length = 196
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = -1
Query: 396 ILSCKDLFWGTLICCAPKPCIGTRRVPKIPSNSRVHSWARTFRIQYCI*GYRCQDCL 226
+L C D F LIC C R +PK H + R + +C+DCL
Sbjct: 105 MLFCPDDFLSCLICMEASQCDDPRYIPK-------HKFGRHMSRHHSKATVKCKDCL 154
>05_03_0168 -
9116648-9117775,9118699-9118885,9119724-9119821,
9119948-9120114,9122242-9122578
Length = 638
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 124 LWPSTRSRNGAWSVTHSPSDVNGVN 198
L+P ++ G W T SP+ +NG N
Sbjct: 236 LYPFLETKRGQWYQTDSPTSLNGQN 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,980,392
Number of Sequences: 37544
Number of extensions: 345556
Number of successful extensions: 845
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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