Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_N22
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 59 4e-10
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces... 28 1.2
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 27 1.6
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1... 27 2.1
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 26 3.6
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 26 4.8
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 26 4.8
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 25 6.3
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 6.3
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 25 6.3
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 6.3
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 59.3 bits (137), Expect = 4e-10
Identities = 26/60 (43%), Positives = 36/60 (60%)
Frame = +3
Query: 3 QCALAASKLLKKPDQSRAVALCAHLFWKGTKDGKQWSLNDASRALDCLKKAGRVAQQCMD 182
+C L ASKLLKKPDQ + L +HL+W+ D R L+CL+K+ ++A CMD
Sbjct: 624 KCTLYASKLLKKPDQCCGIYLASHLWWQVASGEDSRPFQDPKRVLECLQKSLKIADACMD 683
>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 378
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 208 PSSWACTLPSIHCCATRPAFFRQSNALDASFNDH 107
PS W T IH P + Q+N+LD NDH
Sbjct: 229 PSLWNVTRDFIH---QNPQYLAQNNSLDFIVNDH 259
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 217 SSSPSSWACTLPSIHCCATRPAFFRQSNALDASFNDH 107
SSS S CT S++ A R AF + S L N H
Sbjct: 567 SSSQSDAQCTTSSVYITAERKAFSQSSIDLSTLSNHH 603
>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
1|||Manual
Length = 226
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 282 IIQKIREELANLDQSEEVEQITKHF 356
++ + E++ L QSE VE I +HF
Sbjct: 4 VLNALEEKVVELQQSESVEVIKRHF 28
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 346 LNTSTTRCSISRTVSNVPTPTVWATTDSYCPSV-GDR 453
LNTS +R +S + +N P+P + + S P GD+
Sbjct: 154 LNTSASRIGLSSSPTNTPSPNLPVSQPSASPHYSGDK 190
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 153 PSSGN-PTPWTRRSTTTVSHL*FPSRRDVHTEPRLYSDPVSS 31
P G+ P+ ST T+ FPS+ H++ + Y P+S+
Sbjct: 160 PEMGSLPSNTEFTSTPTLGVSEFPSKHGDHSDSKTYESPISN 201
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -2
Query: 100 PSLVPFQKRCAHRATALL*SGF--FKSLLAAR 11
P +VPF K C H A+++ GF F+ + A R
Sbjct: 59 PEIVPFGKLCFHPASSVFHYGFECFEGMKAFR 90
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -1
Query: 122 VVQRPLFPIFSSLPEEMCTQSHGSTLIRFLQEFTR 18
V+Q P FPIFSS+ + + + + L+ F + +++
Sbjct: 447 VIQPPSFPIFSSIDFNVRNREYWNQLMVFQKLYSK 481
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 279 AIIQKIREELANLDQSEEVEQITKHFHNTLQH 374
A+ KIRE NL ++ E+ KH +T++H
Sbjct: 110 AVEAKIREAAKNLMVAQAKEKKGKHKQSTIEH 141
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 255 TLTVNLIDAIIQKIREELANLDQSEEVEQITKHFHNTLQHLKNRIE 392
T V+L+D ++ ++ LAN +QS K TL+ L+N+ E
Sbjct: 24 TAEVDLLDEKLRVLQLLLANCEQSRNENLQEKEHGLTLEDLENQEE 69
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/38 (23%), Positives = 23/38 (60%)
Frame = +3
Query: 249 NSTLTVNLIDAIIQKIREELANLDQSEEVEQITKHFHN 362
N+T +++ + ++E A +D +E+E ++ +FH+
Sbjct: 1410 NATAPYAALESDYRVLQEIYAGIDDPDEIEAVSLNFHD 1447
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,699
Number of Sequences: 5004
Number of extensions: 46448
Number of successful extensions: 146
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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