Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_N22
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0335 + 33211705-33211800,33211886-33211982,33212078-332122... 55 4e-08
09_04_0184 - 15393441-15393642,15393789-15393940,15394047-153942... 31 0.69
01_06_0836 - 32321431-32321556,32321656-32321872,32321975-323235... 30 1.2
10_08_0737 - 20210551-20211216 29 2.8
09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419 29 2.8
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 29 2.8
05_04_0189 - 18911654-18913207,18913310-18913528,18914034-189143... 29 3.7
05_05_0384 - 24557190-24557393,24557481-24557597,24557712-24558440 28 6.5
05_02_0116 + 6773659-6774437,6775103-6775298,6775381-6775565,677... 28 6.5
02_02_0637 - 12491706-12492575,12492580-12492657 28 6.5
09_03_0161 - 12921692-12921880,12922664-12922739,12923045-129231... 27 8.5
05_05_0093 + 22336593-22337198,22338123-22339076 27 8.5
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688... 27 8.5
>03_06_0335 +
33211705-33211800,33211886-33211982,33212078-33212204,
33212953-33213138,33213702-33213789,33214028-33214084,
33214171-33214260,33214339-33214461,33215024-33215098,
33215169-33215228,33215464-33215580,33215854-33216093,
33216181-33216246,33216370-33216459,33216914-33217003,
33217309-33217398,33217702-33217770,33217841-33217921,
33218108-33218215,33218336-33218439,33218822-33218935,
33219018-33219231
Length = 793
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/50 (54%), Positives = 34/50 (68%)
Frame = +3
Query: 18 ASKLLKKPDQSRAVALCAHLFWKGTKDGKQWSLNDASRALDCLKKAGRVA 167
++KLLKKPDQ RAV C+HLFW +DG + D R L CLK+A R+A
Sbjct: 652 SAKLLKKPDQCRAVYACSHLFWTDDQDG----IMDGERVLLCLKRALRIA 697
>09_04_0184 -
15393441-15393642,15393789-15393940,15394047-15394208,
15394372-15394585,15395017-15395297
Length = 336
Score = 31.1 bits (67), Expect = 0.69
Identities = 23/85 (27%), Positives = 39/85 (45%)
Frame = -2
Query: 382 FLRCCSVLWKCLVICSTSSDWSRFANSSRIFCIIASMRLTVRVELPLSRNRAYRPSSSPS 203
F + +L LV +T DW + I+ I + +++ L + R+Y S +
Sbjct: 124 FFKGPKLLGAVLVAATTDDDWVK----GGIYLIGNAFCVSIWYILQVPVCRSYLDPLSLA 179
Query: 202 SWACTLPSIHCCATRPAFFRQSNAL 128
+W C L ++ C AFF +SN L
Sbjct: 180 TWMCFLATLQCAVM--AFFLESNYL 202
>01_06_0836 -
32321431-32321556,32321656-32321872,32321975-32323590,
32323670-32323753,32323834-32324104,32324294-32324547,
32324709-32324918,32325839-32326024
Length = 987
Score = 30.3 bits (65), Expect = 1.2
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Frame = +3
Query: 24 KLLKKPDQSRAVALCAHLFWKGTKDGKQWSLNDASRALDCLKKAGRVAQQCMDGSVQAQX 203
+L K +Q RA + A + K + +Q +L +A + + LKK+ + ++C+ +A
Sbjct: 79 ELTSKHEQLRAASESAEIMHKRERAAQQSALAEARKKEENLKKSLGIQKECVANLEKALH 138
Query: 204 XXXXXXXXXXXXXXXNSTLTVNLIDAIIQKI--REELANLDQSEEVEQITKH 353
+ L++A +K EE L +S E E I H
Sbjct: 139 DMRGETAETKVSYESKLAEALQLMEAAHKKFDEAEEKLLLAKSLEAESIRTH 190
>10_08_0737 - 20210551-20211216
Length = 221
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -3
Query: 162 LDPP-SSGNPTPWTRRSTTTVS--HL*FPSRR 76
L PP ++ P PWT STT +S H+ P RR
Sbjct: 10 LQPPQTTTRPHPWTHTSTTNLSPPHVALPQRR 41
>09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419
Length = 396
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/61 (22%), Positives = 22/61 (36%)
Frame = -2
Query: 352 CLVICSTSSDWSRFANSSRIFCIIASMRLTVRVELPLSRNRAYRPSSSPSSWACTLPSIH 173
C +C+ SD R + ++ + E A P+ PS W C+L
Sbjct: 242 CQAVCTCESDLQNHLRGRRHQLKVQALPEAAKQEKNNPPKLAKNPNKQPSEWVCSLCQAK 301
Query: 172 C 170
C
Sbjct: 302 C 302
>01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 440 LGQYESVVAQTVGVGTFDTVLEMLQRVV 357
+G YE + T+GVGT TV+ ML+ V+
Sbjct: 920 MGCYEVSLGDTIGVGTPGTVVPMLEAVM 947
>05_04_0189 -
18911654-18913207,18913310-18913528,18914034-18914367,
18914425-18914592,18914633-18914724,18914814-18914848,
18915377-18915441,18915565-18915669,18916373-18916434,
18916732-18916860,18918050-18918184,18918336-18918457,
18918808-18918965,18919215-18919372,18919447-18919780,
18919853-18919978,18920213-18920443,18920520-18920692
Length = 1399
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 224 SAEQLAEQLGLHAPVHTLLCDSTRLLQAIQRPGRVVQRPL 105
S E++AE + + +PV T LC + L + ++ GR + R L
Sbjct: 363 SEEEIAEAIDVPSPVGTALCMAAALKKEHEKEGRELVRVL 402
>05_05_0384 - 24557190-24557393,24557481-24557597,24557712-24558440
Length = 349
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 280 ASMRLTVRVELPLSR-NRAYRPSSSPSSWACTLPSIHCC 167
A L + E P S+ N +RP+SS SS +C LP+ H C
Sbjct: 201 AGQLLPLAPEHPSSQSNTIWRPASSSSSSSC-LPATHRC 238
>05_02_0116 +
6773659-6774437,6775103-6775298,6775381-6775565,
6775746-6776079,6776174-6776378,6776692-6776834,
6777081-6777233
Length = 664
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 187 ACRPNCSASCSADMLCCG 240
A + +CS+SCS DM+ CG
Sbjct: 350 ASKLDCSSSCSQDMMFCG 367
>02_02_0637 - 12491706-12492575,12492580-12492657
Length = 315
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 166 HNSVWTGACRPNCSASCSADMLCCGREATLPS 261
+N + CR CSAS A CG E + P+
Sbjct: 77 YNLLLCSTCRAGCSASPPASSWICGTEGSPPT 108
>09_03_0161 -
12921692-12921880,12922664-12922739,12923045-12923157,
12923250-12923477
Length = 201
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 217 SSSPSSWAC---TLPSIHCCATRPAFFRQSNALDASFNDHCFPSLVP 86
SSSPSS L + A RPA F A +A+++D+ FP +P
Sbjct: 25 SSSPSSSRLRRSVLGRLRSRAPRPADFVCRRAKNAAYDDYKFPDPIP 71
>05_05_0093 + 22336593-22337198,22338123-22339076
Length = 519
Score = 27.5 bits (58), Expect = 8.5
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 171 VVRLDPPSSGNPTPWTRR 118
+V + PP++ +P PW RR
Sbjct: 492 IVNVKPPAAADPAPWQRR 509
>01_06_0996 +
33667663-33667900,33668019-33668091,33668785-33668841,
33668970-33669067,33669482-33669637,33669744-33670366,
33670484-33670560,33671551-33671805,33671950-33672067,
33672174-33672345,33672434-33672975
Length = 802
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 177 YTVVRLDPPSSGNPTPWTRRSTTTVSHL 94
+T+ RL PS P P++ S +T+SHL
Sbjct: 62 WTLSRLTGPSHERPEPFSLSSDSTLSHL 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,964,955
Number of Sequences: 37544
Number of extensions: 329771
Number of successful extensions: 1010
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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