Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_N22
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53332-5|AAK31535.2|  821|Caenorhabditis elegans Related to yeas...    69   3e-12
DQ178636-1|ABD75715.1|  826|Caenorhabditis elegans vacuolar prot...    69   3e-12
U53141-8|AAA96110.3|  572|Caenorhabditis elegans Prion-like-(q/n...    30   1.1  
AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical ...    30   1.4  
AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical ...    30   1.4  
AL132862-21|CAB70232.1|  476|Caenorhabditis elegans Hypothetical...    29   2.5  
AF098497-2|AAC64978.1|  144|Caenorhabditis elegans Hypothetical ...    29   3.3  
AC025726-20|AAK73908.1|  318|Caenorhabditis elegans Hypothetical...    29   3.3  
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    28   4.4  
Z81592-6|CAB04733.2|  431|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z77661-2|CAB01184.4|  265|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n...    27   7.6  
AF040650-3|ABE73333.1|  836|Caenorhabditis elegans Hypothetical ...    27   7.6  
AF040650-2|AAT81190.1|  939|Caenorhabditis elegans Hypothetical ...    27   7.6  
AF040650-1|AAB95011.1|  952|Caenorhabditis elegans Hypothetical ...    27   7.6  

>U53332-5|AAK31535.2|  821|Caenorhabditis elegans Related to yeast
            vacuolar proteinsorting factor protein 35 protein.
          Length = 821

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 1/127 (0%)
 Frame = +3

Query: 3    QCALAASKLLKKPDQSRAVALCAHLFWKG-TKDGKQWSLNDASRALDCLKKAGRVAQQCM 179
            Q  LAA+K+ KKPDQ R++   A L+W G T +     + +  + +D L+KA ++A++C+
Sbjct: 670  QTVLAAAKMFKKPDQVRSLVTVAALYWHGQTLETNGEKMKNGKKVVDILRKAAKIARECL 729

Query: 180  DGSVQAQXXXXXXXXXXXXXXXXNSTLTVNLIDAIIQKIREELANLDQSEEVEQITKHFH 359
            +  VQ Q                 S + V+ I+ +I + ++    LD S E + + K   
Sbjct: 730  EPLVQQQLFIQLLSAYTYYYEDNCSEVNVDHIEELIARTQDNAVQLDVSAEADSLEKQLG 789

Query: 360  NTLQHLK 380
              ++ L+
Sbjct: 790  EAIRRLQ 796


>DQ178636-1|ABD75715.1|  826|Caenorhabditis elegans vacuolar protein
            sorting factor protein.
          Length = 826

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 1/127 (0%)
 Frame = +3

Query: 3    QCALAASKLLKKPDQSRAVALCAHLFWKG-TKDGKQWSLNDASRALDCLKKAGRVAQQCM 179
            Q  LAA+K+ KKPDQ R++   A L+W G T +     + +  + +D L+KA ++A++C+
Sbjct: 675  QTVLAAAKMFKKPDQVRSLVTVAALYWHGQTLETNGEKMKNGKKVVDILRKAAKIARECL 734

Query: 180  DGSVQAQXXXXXXXXXXXXXXXXNSTLTVNLIDAIIQKIREELANLDQSEEVEQITKHFH 359
            +  VQ Q                 S + V+ I+ +I + ++    LD S E + + K   
Sbjct: 735  EPLVQQQLFIQLLSAYTYYYEDNCSEVNVDHIEELIARTQDNAVQLDVSAEADSLEKQLG 794

Query: 360  NTLQHLK 380
              ++ L+
Sbjct: 795  EAIRRLQ 801


>U53141-8|AAA96110.3|  572|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 13
           protein.
          Length = 572

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 172 SVWTGACRPNCSASCSADMLCCGREATLPS 261
           ++   AC+P+C +SCS++  C   +A LPS
Sbjct: 335 TICAAACQPSCQSSCSSNAQCV--QACLPS 362


>AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical
           protein Y47D3B.5b protein.
          Length = 1136

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 24  KLLKKPDQSRAVALCAHLFWKGTKDGKQ 107
           KLLKK D+S+  ++C  +  K  K+GK+
Sbjct: 850 KLLKKKDESQQTSICDDVVGKSKKEGKK 877


>AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical
           protein Y47D3B.5a protein.
          Length = 1088

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 24  KLLKKPDQSRAVALCAHLFWKGTKDGKQ 107
           KLLKK D+S+  ++C  +  K  K+GK+
Sbjct: 850 KLLKKKDESQQTSICDDVVGKSKKEGKK 877


>AL132862-21|CAB70232.1|  476|Caenorhabditis elegans Hypothetical
           protein Y73F8A.26 protein.
          Length = 476

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 355 KCLVICSTSSDWSRFANSSRIFCIIASMRLTV 260
           KC ++C    DWS    +  I  ++ASMR +V
Sbjct: 219 KCRLLCQDKIDWSVVDGNPEIDILLASMRASV 250


>AF098497-2|AAC64978.1|  144|Caenorhabditis elegans Hypothetical
           protein B0294.1 protein.
          Length = 144

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = -1

Query: 296 YLLYYRIDEVNGEGRVASLPQQSISAEQLAEQLGLHAPVHTLLCDSTR 153
           + ++Y  ++++  G +A++PQ     ++LA+  G    +   L D TR
Sbjct: 60  FAMFYPSEQISSFGGIANIPQNQHRKQELAKADGTCQRMEKTLLDKTR 107


>AC025726-20|AAK73908.1|  318|Caenorhabditis elegans Hypothetical
           protein Y71G12B.10 protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 437 GQYESVVAQTVGVGTFDTVLEMLQRVVE 354
           G YE  +  T+GVGT  TV +ML  V++
Sbjct: 183 GCYEVSLGDTIGVGTVKTVSKMLDTVLK 210


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
           protein C39D10.7 protein.
          Length = 1185

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -3

Query: 156 PPSSGNPTPWTRRSTTTVSHL*FPSRRDVHTEPRLYSDPVSSRVYSPPGRT 4
           P  +G+ T +    TTT S   + S  +   +P  Y+ P S+ VYSPP  T
Sbjct: 257 PEYNGSETSYRAPKTTTSSSS-YGSIAEAPVDPTPYA-PASAPVYSPPRTT 305


>Z81592-6|CAB04733.2|  431|Caenorhabditis elegans Hypothetical
           protein T16G1.6 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 273 IDAIIQKIREELANLDQSEEVEQITKHFHNTLQHLKNR 386
           +  I+ K++E   +++++EE  ++   F N  QHL NR
Sbjct: 86  VHGIVDKMKESNQSINENEE--ELWAMFENEAQHLHNR 121


>Z77661-2|CAB01184.4|  265|Caenorhabditis elegans Hypothetical
           protein F40G12.2 protein.
          Length = 265

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 318 DQSEEVEQITKHFHNTLQHLKNRIECPD 401
           +  E+V  ++ +F N LQHLK++   PD
Sbjct: 214 ENCEKVHFLSSNFWNCLQHLKSKNTIPD 241


>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
            isoform a protein.
          Length = 1702

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -3

Query: 153  PSSGNPTPWTRRSTTTVSHL*FPSRRDVHTEPRLYSDPVSSRV 25
            PS+  P P +R   T V H       D +  P LY DP+   V
Sbjct: 1575 PSTSEPGPSSRPIRTGVHHREEALNEDDNGSPILYDDPIMGYV 1617


>AF040650-3|ABE73333.1|  836|Caenorhabditis elegans Hypothetical
           protein T04B8.5c protein.
          Length = 836

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -2

Query: 364 VLWKCLVICSTSSDWSRFANSSRIFCIIASMRLTV-RVELPLSRNRAYRPSSSPSSW-AC 191
           + W C+V+       ++ A  + IF +++ M + V  + L L+    +RP+    SW  C
Sbjct: 337 ITWMCVVLVFLVGAMNKIAKLTSIFFLLSYMGVNVATLALELTSAPNFRPTFKYFSWQTC 396

Query: 190 TL 185
            L
Sbjct: 397 AL 398


>AF040650-2|AAT81190.1|  939|Caenorhabditis elegans Hypothetical
           protein T04B8.5b protein.
          Length = 939

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -2

Query: 364 VLWKCLVICSTSSDWSRFANSSRIFCIIASMRLTV-RVELPLSRNRAYRPSSSPSSW-AC 191
           + W C+V+       ++ A  + IF +++ M + V  + L L+    +RP+    SW  C
Sbjct: 440 ITWMCVVLVFLVGAMNKIAKLTSIFFLLSYMGVNVATLALELTSAPNFRPTFKYFSWQTC 499

Query: 190 TL 185
            L
Sbjct: 500 AL 501


>AF040650-1|AAB95011.1|  952|Caenorhabditis elegans Hypothetical
           protein T04B8.5a protein.
          Length = 952

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -2

Query: 364 VLWKCLVICSTSSDWSRFANSSRIFCIIASMRLTV-RVELPLSRNRAYRPSSSPSSW-AC 191
           + W C+V+       ++ A  + IF +++ M + V  + L L+    +RP+    SW  C
Sbjct: 453 ITWMCVVLVFLVGAMNKIAKLTSIFFLLSYMGVNVATLALELTSAPNFRPTFKYFSWQTC 512

Query: 190 TL 185
            L
Sbjct: 513 AL 514


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,130,009
Number of Sequences: 27780
Number of extensions: 266656
Number of successful extensions: 978
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)