Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_N21
(501 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 195 4e-51
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 123 2e-29
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 120 1e-28
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 78 6e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 55 7e-09
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 54 9e-09
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 51 9e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 44 1e-05
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 40 2e-04
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 31 0.074
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 28 0.91
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 2.1
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 2.8
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 26 3.7
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 25 6.4
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 25 6.4
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.4
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 25 8.4
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 8.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 195 bits (475), Expect = 4e-51
Identities = 93/116 (80%), Positives = 100/116 (86%)
Frame = +2
Query: 152 PSTPKPTERR*HRLCSRLFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 331
P PK + ++ FN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEG
Sbjct: 109 PLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEG 168
Query: 332 YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIXEKLCYVALDFE 499
YALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIVRDI EKLCYVALDFE
Sbjct: 169 YALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFE 224
Score = 146 bits (353), Expect = 2e-36
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +1
Query: 1 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 180
QSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREK
Sbjct: 59 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREK 118
Query: 181 MTQIMFET 204
MTQI+FET
Sbjct: 119 MTQIIFET 126
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 123 bits (296), Expect = 2e-29
Identities = 57/107 (53%), Positives = 77/107 (71%), Gaps = 3/107 (2%)
Frame = +2
Query: 188 RLCSRLFNT---PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILR 358
++C +F +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + R
Sbjct: 118 KMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGR 177
Query: 359 LDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIXEKLCYVALDFE 499
LD+AGRD T YL+ +L +GY+F TA+ E VR++ EKLCYV+ D E
Sbjct: 178 LDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLE 224
Score = 79.8 bits (188), Expect = 2e-16
Identities = 30/67 (44%), Positives = 51/67 (76%)
Frame = +1
Query: 1 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 180
++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREK
Sbjct: 59 EAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREK 118
Query: 181 MTQIMFE 201
M + MFE
Sbjct: 119 MCETMFE 125
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 120 bits (289), Expect = 1e-28
Identities = 53/96 (55%), Positives = 75/96 (78%)
Frame = +2
Query: 209 NTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 388
N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TD
Sbjct: 133 NVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTD 192
Query: 389 YLMKILTERGYSFTTTAEREIVRDIXEKLCYVALDF 496
YL L + G+ ++AE+EIVR+I EK CYVA DF
Sbjct: 193 YLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDF 228
Score = 77.0 bits (181), Expect = 1e-15
Identities = 33/70 (47%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = +1
Query: 1 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANRE 177
Q+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL N+E
Sbjct: 63 QNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKE 122
Query: 178 KMTQIMFETV 207
K+ + +ET+
Sbjct: 123 KIAEYFYETL 132
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 78.2 bits (184), Expect = 6e-16
Identities = 32/61 (52%), Positives = 40/61 (65%)
Frame = +1
Query: 22 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 201
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 202 T 204
+
Sbjct: 149 S 149
Score = 75.4 bits (177), Expect = 5e-15
Identities = 47/124 (37%), Positives = 66/124 (53%), Gaps = 10/124 (8%)
Frame = +2
Query: 152 PSTPKPTERR*HRLCSRLFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVS 307
P P + FN +Y+A+QAVL+L AS + TG V+DSGDGV+
Sbjct: 132 PLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVT 191
Query: 308 HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAEREIVRDIXEKLCY 481
H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER I E+ CY
Sbjct: 192 HIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCY 246
Query: 482 VALD 493
V D
Sbjct: 247 VCPD 250
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 54.8 bits (126), Expect = 7e-09
Identities = 24/64 (37%), Positives = 37/64 (57%)
Frame = +1
Query: 19 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 198
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 199 ETVQ 210
E+++
Sbjct: 123 ESLR 126
Score = 39.5 bits (88), Expect = 3e-04
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +2
Query: 215 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 394
PA Y+A Q + +ASG+ T ++D G S IY+G+ L +G + D L
Sbjct: 128 PATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDIL 187
Query: 395 MKILTERGY 421
+ L ++ +
Sbjct: 188 AQTLRDKNF 196
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 54.4 bits (125), Expect = 9e-09
Identities = 25/74 (33%), Positives = 46/74 (62%)
Frame = +2
Query: 278 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 457
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216
Query: 458 DIXEKLCYVALDFE 499
+I E +CYV+ +F+
Sbjct: 217 EIKESVCYVSQNFK 230
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 51.2 bits (117), Expect = 9e-08
Identities = 22/56 (39%), Positives = 35/56 (62%)
Frame = +1
Query: 34 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 201
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFE 140
Score = 46.0 bits (104), Expect = 3e-06
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Frame = +2
Query: 191 LCSRLFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 364
L L+N P++ I + S Y + + ++GIVL+ G+ SH +P+ G + R+
Sbjct: 137 LLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRIS 196
Query: 365 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIXEKLCYVALDF 496
G + YL+K+ + SF + C+V+ D+
Sbjct: 197 WGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDY 240
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 44.0 bits (99), Expect = 1e-05
Identities = 25/85 (29%), Positives = 42/85 (49%)
Frame = +2
Query: 215 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 394
P +A + ++ LYA G G+V+D G + PI +G + A +L L GR +T +L
Sbjct: 176 PGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHL 235
Query: 395 MKILTERGYSFTTTAEREIVRDIXE 469
+L E + ++ + DI E
Sbjct: 236 QNLLRESLPTLKSSGQYVSKEDITE 260
Score = 31.9 bits (69), Expect = 0.056
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +1
Query: 34 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 201
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 202 TVQ 210
Q
Sbjct: 172 ECQ 174
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 39.9 bits (89), Expect = 2e-04
Identities = 15/53 (28%), Positives = 31/53 (58%)
Frame = +1
Query: 43 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 201
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFE 126
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.5 bits (68), Expect = 0.074
Identities = 13/64 (20%), Positives = 34/64 (53%)
Frame = +2
Query: 236 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 415
+++ + + +G + V+D G + + EG +P++ ++++ G D+T MK+L
Sbjct: 280 ESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRS 339
Query: 416 GYSF 427
+ +
Sbjct: 340 HFPY 343
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 27.9 bits (59), Expect = 0.91
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +1
Query: 94 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETVQHT 216
+Y L E+HP+LLT+ A L P+ + ++ +I FE ++T
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRI-FEKSENT 1440
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -1
Query: 252 SESTAWIATYMAGVLNSLEHNLCHLLSVGFGVEGSFGEQDWVLLGSYTQLIVEGVM 85
+ S ++TYM G S+ + HL+ + F G+ +Q + TQLI+ G++
Sbjct: 1680 THSLKLLSTYMVGFSTSIIQYIIHLILLEFDFNGNNKKQKEYV----TQLILSGLL 1731
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 2.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 89 TPSTMSCV*LPRSTQSCSPKLPSTPKPTE 175
TPS S P S+ + SP PSTP T+
Sbjct: 405 TPSKPSTFVRPHSSSTDSPPSPSTPSNTQ 433
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 3.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 261 PVVPPVSCWIPAMVYPTQYPSTRVTPY 341
P+ WIP MVYP + T+ TP+
Sbjct: 513 PIYSKSDGWIPVMVYP--FIDTKQTPF 537
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 25.0 bits (52), Expect = 6.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 15 YPHTQIPHRTRHRHQLGRYGEDLASHLLQ*AACSSRG 125
Y + + PH+ +H LG YG ++ L C +G
Sbjct: 307 YGNPEHPHQRKHAFDLGEYGAGYLTNPLA-LGCDCKG 342
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 6.4
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -3
Query: 130 GAPRELHAAHCRRCDARSSP 71
G PRE HCR C+ P
Sbjct: 52 GIPRESTVNHCRECERYMQP 71
>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 167
Score = 25.0 bits (52), Expect = 6.4
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +1
Query: 112 VAPEEHPVLLTEAPLNPKANREKMTQIMFETVQHTRHVRSYPGRALTVRVRSYH 273
++ EE P LT+ NPK N+ + + + H+ G + R+YH
Sbjct: 1 MSEEESPYQLTKTFSNPKNNKIGLAIFLIGAFINLIHIYKPKGPSNNPTKRNYH 54
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 80 SGITPSTMSCV*LPRSTQSCSPKLPSTPKPT 172
S T S +S + R ++S LPSTP PT
Sbjct: 399 SSTTCSNLSSPHIKRKSRSPPQSLPSTPFPT 429
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 8.4
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +2
Query: 290 SGDGVSHTVPIYEGYALP 343
+G G+ H + + +GYA+P
Sbjct: 157 AGRGIGHQIMVEQGYAMP 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,628
Number of Sequences: 5004
Number of extensions: 47502
Number of successful extensions: 139
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -