Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_N19
         (293 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   2.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   5.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   5.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    19   9.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 286  LGPPGRRVHPVPELGY 239
            + PP R++ PVP   Y
Sbjct: 1646 IAPPNRKLPPVPGSNY 1661


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 40  IHVEVIPPL 14
           +HVEV PPL
Sbjct: 331 LHVEVTPPL 339


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 40  IHVEVIPPL 14
           +HVEV PPL
Sbjct: 331 LHVEVTPPL 339


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 10/40 (25%), Positives = 15/40 (37%)
 Frame = -3

Query: 135 KRPRSPLAAGSTRAHSSPSTNNVIRSGAHLIEYTWKSSPH 16
           KRP      G    H +   +  + +   L+E  W   PH
Sbjct: 230 KRPELTNRKGVVFHHDNARPHTSLVTRQKLLELGWDVLPH 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,396
Number of Sequences: 438
Number of extensions: 1691
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)