Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_N18
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   3.4  
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    24   5.9  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    24   5.9  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    24   5.9  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 47  ASILSGSILTYLTLNSP*AYGEGKYREETIAWWLGILQLCP 169
           A  +S +ILT LTL       E + REE    W+ I   CP
Sbjct: 207 AQAISSTILTVLTLRFKSLSEETEDREEVETKWMNI--WCP 245


>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 270 SWTT*SLNIRCDC 308
           SW   SL I+CDC
Sbjct: 183 SWAVPSLGIKCDC 195


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +1

Query: 19  GAVNSS--AGFRVNPLRFDPH 75
           GA NS+  AG+ + P+R DP+
Sbjct: 95  GATNSNGDAGYSITPIRNDPY 115


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 39  RIPRQSSQVRSSPI*LLIRPE 101
           R+PR +S +++SP+ L + P+
Sbjct: 545 RLPRVASPLKTSPVKLAVTPQ 565


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,375,061
Number of Sequences: 5004
Number of extensions: 27689
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)