Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_N18
(308 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1396 + 33227126-33227846,33228530-33228637,33228825-33230029 27 3.0
07_03_1463 - 26722081-26722365,26722831-26722982,26723229-267233... 27 4.0
12_02_1130 + 26353501-26354218,26354878-26354967,26355080-26355555 26 5.2
06_03_1325 - 29334401-29334859,29335163-29335857,29336538-293367... 26 5.2
05_07_0320 + 29235266-29235305,29235409-29236682 26 5.2
03_05_0263 + 22503943-22506240 26 5.2
01_01_1003 - 7939376-7939414,7939464-7939568,7939757-7939872,794... 26 6.9
01_01_0353 - 2802779-2802794,2802901-2802962,2803458-2803844 26 6.9
12_01_0449 + 3548389-3548503,3549282-3549425,3550087-3550212,355... 25 9.2
01_06_1466 + 37559600-37559795,37560597-37560730,37561252-375614... 25 9.2
>04_04_1396 + 33227126-33227846,33228530-33228637,33228825-33230029
Length = 677
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 134 IAWWLGILQLCPPGYLLPSSVRPNTN--RCI 220
+ WWL +++ G +LP SV PNT RC+
Sbjct: 178 LEWWLDLIR---DGAILPLSVGPNTTDFRCL 205
>07_03_1463 -
26722081-26722365,26722831-26722982,26723229-26723354,
26724190-26724333,26724901-26725015
Length = 273
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 119 YREETIAWWLGILQLCPPGYLLPSSVRPN 205
+++E LG+++ PP +LP S+ PN
Sbjct: 237 HKDEEYDSMLGVVREIPPELILPDSILPN 265
>12_02_1130 + 26353501-26354218,26354878-26354967,26355080-26355555
Length = 427
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -1
Query: 188 RGVDTQAGIIVKCPTTMLWFPHDIFLHRKLRAN*ESDR*GSNLRG 54
RG +T G+I + PT ML F + +R G N RG
Sbjct: 239 RGANTSLGVIREAPTMMLIFAAALLTLVVIRGGRRMGAGGQNQRG 283
>06_03_1325 -
29334401-29334859,29335163-29335857,29336538-29336750,
29338791-29339472,29339781-29340020
Length = 762
Score = 26.2 bits (55), Expect = 5.2
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3
Query: 183 SRYPGGHNCKMP 148
S +PGGHNC P
Sbjct: 326 SNFPGGHNCSCP 337
>05_07_0320 + 29235266-29235305,29235409-29236682
Length = 437
Score = 26.2 bits (55), Expect = 5.2
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Frame = +3
Query: 123 VRKP*HGGWAFYNYARLGI-YSPRVYGQIPIG----VFRQHHSR--TSTSRQLCLPSWTT 281
+R+ + FY G+ Y P I IG +HS T+TS + C+PSW
Sbjct: 23 IRRDAPKAYCFYGIEWTGVPYLPGTAAAIYIGNTNSCIAGYHSPPDTATSYRFCIPSWVA 82
Query: 282 *SLNIRCDC 308
+ N C
Sbjct: 83 FTANATTLC 91
>03_05_0263 + 22503943-22506240
Length = 765
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +3
Query: 159 NYARLGIYSPRVYGQIPIGVFRQHHSRTSTSRQLCLPSWTT 281
NY + +Y+ + P+ + ++ ST+ LC+P T
Sbjct: 346 NYTGVSLYAGKALPSTPLPIVYAANASNSTAGNLCMPGTLT 386
>01_01_1003 -
7939376-7939414,7939464-7939568,7939757-7939872,
7941494-7942760
Length = 508
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 224 PEYTYWYLAVHSRGVDTQAGIIVKCPTTMLWFPHDIFL 111
P Y++L H GVD + +V+C L P F+
Sbjct: 369 PNVVYFFLEEHLFGVDVRDRKVVECEAYELVAPPSCFI 406
>01_01_0353 - 2802779-2802794,2802901-2802962,2803458-2803844
Length = 154
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 164 CPPGYLLPSSVRPNTNRCIPAASF 235
CP G +LP P C+PAA F
Sbjct: 61 CPGGIVLPLDGPPWDAACVPAALF 84
>12_01_0449 +
3548389-3548503,3549282-3549425,3550087-3550212,
3550468-3550619,3551118-3551402
Length = 273
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 119 YREETIAWWLGILQLCPPGYLLPSSVRPN 205
+++E LG+++ PP +LP ++ PN
Sbjct: 237 HKDEEYDSMLGVVREIPPELILPDNILPN 265
>01_06_1466 +
37559600-37559795,37560597-37560730,37561252-37561437,
37562538-37562753,37563008-37563119,37563493-37563663,
37564621-37564684,37565555-37565685,37566263-37566393,
37566843-37566945,37567322-37567398,37567813-37567860,
37568162-37568311,37568810-37569010
Length = 639
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 197 VHSRGVDTQA-GIIVKCPTTMLWFPHDIF 114
VH G T A G++ CPTT++ F D F
Sbjct: 508 VHHGGAGTTAAGLVAGCPTTIVPFFGDQF 536
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,253,843
Number of Sequences: 37544
Number of extensions: 196731
Number of successful extensions: 433
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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